CV884372

Overview
NameCV884372
Unique NameCV884372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884372_ssr237 microsatellite CV884372_ssr237:237..251. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: COQ1_NEUCR (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Neurospora crassa GN=NCU02305 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.192e-22
Identity = 67/183 (36.61%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  335 IHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVPEPLHDGVEDALA---------------------------TELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRACV 796
            +++  +  I+ TD    +DP  LVA E+  L   +R ++ +  P L  AA+Y+ +   EGK  RP ++LLM  ATAL  + P+     ++ + A                           T++   Q+ +AEITE+IH ASLLHDDV+D ++++RG  S N   GNK+AVLAGDFLL RA V
Sbjct:   64 VNNAVTKAIKGTDGLPTIDPLRLVAGEMKFLTGNIRKLLGSGHPSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATALCPKAPQRQQSTLQASAAIDTSISPLNILSDFNPSDATPVSIPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLAGDFLLGRASV 244          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: COQ1_YARLI (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Yarrowia lipolytica GN=COQ1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 69/199 (34.67%), Postives = 102/199 (51.26%), Query Frame = 2
Query:  344 QSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHD--------------------GVEDALA----------------------------TELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRACV 796
            Q+S ++E TD+  + DPFS+V+ E+S LA  + S++ +  P L   A Y+F+   EGK  RP ++LL++ AL+  +PE   D                     + D L+                              +  +Q+ +AEI EMIH ASLLHDDV+D++ T+RG  + N   GNK+A+LAGDFLL RA V
Sbjct:   55 QASRLVE-TDTPIR-DPFSIVSQEMSTLANNIGSLIGSGHPTLNKVATYYFQS--EGKHVRPLIVLLLSRALSA-IPESERDRGTFDASDVTENVGELNPEPSINDPLSPIEILHGINPDIVLNPLSRPSDPLPYESNGILPKQRRLAEIVEMIHTASLLHDDVIDNSATRRGSPTGNVAFGNKMAILAGDFLLGRASV 248          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  395 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRA 790
            F+ V  +L +L   L+ +V A  P L +AAE+ F+ G  GKR RP ++LL++ A                L  EL  R + +AEITEMIH ASL+HDDV+D+AD +R + ++N +  N++AVLAGDFL +++
Sbjct:    8 FAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT--------------LLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRVAVLAGDFLFAQS 123          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.590e-19
Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  308 PALHGIRHQIHHQSSSVIE--DTDSQEQL-DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRACV 796
            P +H I  Q H ++ ++     T S E+  DPF L   +L  L + +R  +     +L   +EY+F    +GK FRP +++LMA A N+      H+      A E++  Q+ IA + EMIH A+L+HDDV+DDA ++RG  ++N + G K AVLAGD +LS A V
Sbjct:   59 PTMHSIS-QFHQRTPAMCSCRQTQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKDMSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIALVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASV 211          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: DPS1_HUMAN (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  341 HQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRACV 796
            H ++   +    ++  DPF L   +L  L + +R  ++    +L   +EY+F    +GK FRP ++ LMA A N+      H          ++  Q+ IA I EMIH ASL+HDDV+DDA ++RG  ++N + G K AVLAGD +LS A +
Sbjct:   78 HHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDG--KGKAFRPIIVALMARACNIHHNNSRH----------VQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASI 217          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 51/129 (39.53%), Postives = 84/129 (65.12%), Query Frame = 2
Query:  404 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRA 790
            V +EL +L K L+ +V +  P L++A+E+ F     GKR RP ++LL++ A            +E+ + T   +R + +AEITE+IH ASL+HDD+LD++D +RGI +++   G K+A+LAGDFL +++
Sbjct:   11 VENELDLLTKNLKKLVGSGHPILSAASEHLFS--ASGKRPRPAIVLLISKAT-----------MENEIIT---SRHRRLAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAGDFLFAQS 123          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  464 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRACV 796
            P L+S + Y+F++  +GKR RPT++LL++ AL+  V                   Q  +AEI EMIH ASL+HDDV+D+A T+R + S+N    NKLA+L GD+LL+RA V
Sbjct:  168 PILSSISSYYFEL--KGKRIRPTIVLLLSKALSSTV----------------HGSQLKLAEIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCGDYLLARASV 260          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: PREA_PORYE (Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  395 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRA 790
            F  V  EL  L K L+++     P L +AA++ F  G  GKR RP ++ L+A A + +               ++ T Q+ +AEITE+IH ASL+HDD++D+  T+RG+ +++ +   K+AVLAGDFL +++
Sbjct:    8 FYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK--------------QDINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKIAVLAGDFLFAQS 123          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 2
Query:  404 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRA 790
            V ++L  + + L  ++    P L++AA++   + VE K+ RP ++LL+A A++                 +++T QQ +AE+TE+IH A+LLHDDV+D++  +RG  S+N   GNK+AV AGDFL +++
Sbjct:   11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN--------------KKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVFAGDFLFAQS 123          
BLAST of CV884372 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 48/132 (36.36%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  395 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTKRGIGSLNFVMGNKLAVLAGDFLLSRA 790
            F  +  EL  +   L+S+     P L +AA++ F+ G  GKR RP ++LL+A + + +               E++  Q+ +AEITE+IH ASL+HDDV+D+  T+RG  +++ +   K+AVLAGDFL +++
Sbjct:    8 FHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ--------------QEIKPGQRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAGDFLFAQS 123          
The following BLAST results are available for this feature:
BLAST of CV884372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COQ1_NEUCR1.192e-2236.61Probable hexaprenyl pyrophosphate synthetase, mito... [more]
COQ1_YARLI1.611e-1934.67Probable hexaprenyl pyrophosphate synthetase, mito... [more]
PREA_SYNY32.105e-1941.67Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
DPS1_MOUSE3.590e-1937.95Decaprenyl-diphosphate synthase subunit 1 OS=Mus m... [more]
DPS1_HUMAN2.327e-1836.18Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]
PREA_CYAPA1.155e-1739.53Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
DPS1_DICDI1.668e-1644.14Decaprenyl-diphosphate synthase OS=Dictyostelium d... [more]
PREA_PORYE2.845e-1637.12Prenyl transferase OS=Porphyra yezoensis GN=preA P... [more]
PREA_CYACA3.715e-1636.43Prenyl transferase OS=Cyanidium caldarium GN=preA ... [more]
PREA_PORPU2.408e-1536.36Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884372 ID=CV884372; Name=CV884372; organism=Citrus sinensis; type=EST; length=797bp
CTAAAACTCCCCCGCAGTCGGTTGCTGTTATCCCCTTTTGTGCTTTGACT
TTCTCATTGACCGACCCAACACCATCTCTCAAATCTTAAATCTCCTCCGC
CGTTATTTTTATTAATTAACTGAATAAAGGATGTTAATTTATCGTGGACT
TTCTCGGATTTCTAGAATCTCGAAAAAGACTTCGTTTGGCCGCCGTTGGC
TTCCCTCTCACCCGCTTCTCTCCGGTGCTTCACACTCTGCTGCTGCTGCT
GCGGCGGACTCTTCTGTGAAGGTTTTGGGTTGCAGAGAAGCTTATTCATG
GAGTTTGCCTGCCTTGCATGGAATTAGACATCAAATTCATCACCAGAGCA
GCTCCGTAATTGAGGATACTGATTCCCAGGAGCAGCTCGACCCATTTTCT
CTTGTTGCTGATGAACTGTCAATACTTGCTAAAAGGTTGCGCTCCATGGT
AGTTGCTGAGGTGCCTAAGCTTGCCTCAGCTGCTGAGTATTTCTTTAAAA
TGGGGGTGGAAGGAAAGAGGTTCCGTCCCACGGTTTTATTGCTGATGGCA
ACAGCTCTGAATGTGCGAGTACCTGAACCTCTACATGATGGAGTAGAAGA
TGCTTTGGCGACTGAACTACGTACAAGGCAACAATGTATAGCTGAGATTA
CAGAGATGATCCATGTAGCAAGCCTTCTTCATGATGATGTCTTGGATGAT
GCAGATACCAAGCGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAA
GTTAGCTGTATTAGCGGGTGATTTTCTTCTTTCCCGTGCTTGTGTTG
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