CV884368

Overview
NameCV884368
Unique NameCV884368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884368_ssr464 microsatellite CV884368_ssr464:464..484. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3334 contig Csv1_Contig3334:58..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884368 vs. ExPASy Swiss-Prot
Match: YJ72_SCHPO (Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe GN=SPCC757.02c PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 70/252 (27.78%), Postives = 112/252 (44.44%), Query Frame = 2 
Query:   80 PNFYYTLEDILFEEVEKKEELSWSVHRPDTIFGFSPYSLMNLVGALCVYAAVCKHEGIPLRFPGTKAAWECYSIASDADLIAEHQIWAAVDPYAKNEAFNCNNGDVFKWKHLWKVLAEQFGIE--------DYGLS----------------XXXXXXXXXXXXTQRVKLAEFMKGK--EGVWEEIVRENQLQPTRLDEVGAWWFVDLVLTGEAK-LASMNKSKEHGFSGFRNSKNSFITWIDKAKGYKIVP 754
            PNFYY  EDIL +E    ++  +++  P+ I G S  S MN    + +YA VC+    P RFPG +  +  +   S + LIA+ Q+W         E FN  NGD+  W   W  +AE FG+E        D+ LS                              ++ L +++K K  +  W  I    +L    L EVG W F D +       ++SM+K+++ G++ + ++ + F    D+ K  K +P
Sbjct:  154 PNFYYVQEDIL-KEFSNGKKWDYTIAMPNDICGVSKGSYMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFDDISYSKLIADFQLWMTFKAECSEEKFNIVNGDIHSWSRTWPKIAEYFGVEVPKNQFATDFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAEREKLNAHAL-EVGTWAFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQKQIP 403
The following BLAST results are available for this feature:
BLAST of CV884368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YJ72_SCHPO6.891e-2127.78Uncharacterized protein C757.02c OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884368 ID=CV884368; Name=CV884368; organism=Citrus sinensis; type=EST; length=821bp
CCTGGGCCCATTCGAGGCATTCGGCAAGATCAAGCCGTACGATCCCCCCT
TCACGGAAGATATGCCTAGATTAGACGCACCGAATTTCTACTACACTCTC
GAAGATATACTGTTTGAAGAGGTTGAAAAGAAGGAGGAATTGTCGTGGTC
AGTGCACAGACCCGATACGATTTTCGGATTTTCCCCGTACAGTTTGATGA
ACCTCGTTGGCGCCCTTTGCGTCTACGCGGCTGTGTGTAAACACGAAGGG
ATCCCGTTGAGGTTCCCTGGGACCAAAGCTGCGTGGGAGTGTTACTCGAT
TGCTTCGGACGCGGATCTAATTGCGGAGCATCAAATATGGGCTGCGGTGG
ATCCGTATGCGAAGAACGAAGCGTTTAACTGCAACAACGGGGATGTATTC
AAGTGGAAGCATTTGTGGAAGGTGTTGGCGGAGCAGTTTGGGATAGAGGA
TTATGGGCTTTCTGAAGAAGAAGAAGAAGAAGAAGAGGGTGGTGGTGGGA
CCCAGAGAGTGAAGCTGGCGGAGTTTATGAAGGGGAAAGAAGGTGTGTGG
GAGGAGATTGTGAGGGAGAATCAGCTGCAGCCTACCAGATTGGATGAAGT
TGGTGCGTGGTGGTTTGTTGATCTTGTGTTAACTGGGGAAGCTAAATTGG
CTTCGATGAATAAGAGTAAGGAGCATGGCTTCTCGGGTTTTAGAAACTCC
AAGAATTCGTTTATTACTTGGATCGACAAAGCGAAGGGTTACAAGATTGT
GCCTTAAAAGTTGTGGGTGCATTTTTTTTCTTCCCCCTCTCTTTTGTTTT
TCTTGTAATGGATTGCATCTC
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