CX043499

Overview
NameCX043499
Unique NameCX043499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3575 contig Csv1_Contig3575:1..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.625e-31
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  247 RAFSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            R FSS S++P +   LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKF
Sbjct:   44 RGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKF 120          

HSP 2 Score: 27.7202 bits (60), Expect = 1.625e-31
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  116 LILKFVLSMSASKDVL 131          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.080e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  220 LGPQFQLPCRAFSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            L  QF    R FSS S++P +   LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKF
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKF 130          

HSP 2 Score: 27.7202 bits (60), Expect = 6.080e-31
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  126 LILKFVLSMSASKDVL 141          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.080e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  220 LGPQFQLPCRAFSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            L  QF    R FSS S++P +   LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKF
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKF 130          

HSP 2 Score: 27.7202 bits (60), Expect = 6.080e-31
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  126 LILKFVLSMSASKDVL 141          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.031e-30
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1
Query:  247 RAFSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            R FSS S++  +   LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKF
Sbjct:   58 RGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKF 134          

HSP 2 Score: 27.7202 bits (60), Expect = 1.031e-30
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  130 LILKFVLSMSASKDVL 145          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.870e-30
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:  253 FSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            FSS S++  +   LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKF
Sbjct:   24 FSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKF 98          

HSP 2 Score: 27.7202 bits (60), Expect = 3.870e-30
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:   94 LILKFVLSMSASKDVL 109          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.109e-29
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 1
Query:  232 FQLPCRAFSS-ESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            F +  R FSS E++ PRN ++ +  +PATVAAVKNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+LKF
Sbjct:   53 FFVASRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKF 135          

HSP 2 Score: 27.7202 bits (60), Expect = 1.109e-29
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  131 LVLKFVLSMSASKDVL 146          
BLAST of CX043499 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.881e-29
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1
Query:  247 RAFSSESLTPRNVESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKF 477
            R FSS S++P +   LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLILKF
Sbjct:   51 RGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKF 127          

HSP 2 Score: 27.7202 bits (60), Expect = 1.881e-29
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  464 LSLNFVLSMSASKDVL 511
            L L FVLSMSASKDVL
Sbjct:  123 LILKFVLSMSASKDVL 138          
The following BLAST results are available for this feature:
BLAST of CX043499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.625e-3180.52Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI5_TOBAC6.080e-3173.26Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI3_TOBAC6.080e-3173.26Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI2_TOBAC1.031e-3079.22Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI4_TOBAC3.870e-3080.00Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE1.109e-2971.08Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SOLTU1.881e-2976.62Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11E01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11E01-I1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043499 ID=CX043499; Name=CX043499; organism=Citrus sinensis; type=EST; length=511bp
CGAAAAGCGAGAGACCGATAACACCAATCGCCATTTCGAAGAGATAATCA
GAGAGAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCGTCATTGAGGCCCATGGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAG
CTTTTTCTTCTGAGTCACTGACACCAAGAAATGTAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAATACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTACGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTTGTACTGAGCATGTCAGCGAGTA
AGGATGTTCTT
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