EH406505

Overview
NameEH406505
Unique NameEH406505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 6.314e-40
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            R+VLHDID+EAKE+AL YHSERLAIAYG+I TPPR  L IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRFHHF+DGKCSCGDYW
Sbjct:  493 RFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.317e-37
Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +YVLHDIDEEAKEKAL +HSERLAIA+G+I+TPP   +R++KNLRICGDCHN IKI+S I  RE+IVRDNKRFHHFRDG CSCGDYW
Sbjct:  153 KYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.846e-32
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VLHD++EE KE+ L++HSE+LAIA+GLISTP +  LRI+KNLR+C DCH AIK +SK+VGRE+IVRD  RFHHF+DG CSC DYW
Sbjct:  702 VLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.079e-31
Identity = 54/86 (62.79%), Postives = 73/86 (84.88%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            + L D++EE KE+AL YHSE+LA+A+GL+STPP  P+R+IKNLR+CGDCHNA+K ++K+  RE+++RD  RFH F+DG CSCGDYW
Sbjct:  905 FTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VLHD++EE KE+ ++YHSERLA+AYG++      P+R+IKNLR+C DCHNAIK M++I GR +I+RDN RFHHF+DG CSCGDYW
Sbjct:  697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.473e-30
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            V HD+DEE KE  L+ HSE+LAIA+G+++T P   + ++KNLR+C DCHN IK++SKIV RE +VRD KRFHHF+DG CSCGDYW
Sbjct:  575 VCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.535e-30
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VL D++E  KE++LQ HSERLAIAYGLIST P  PL+I KNLR+C DCH   K++SKI GR++++RD  RFHHF DG CSCGD+W
Sbjct:  548 VLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.320e-29
Identity = 53/86 (61.63%), Postives = 70/86 (81.40%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +VLHD+DEE K  +L  HSERLA+AYGL+  P  +P+R++KNLR+CGDCH AIK++SK+  RE+I+RD  RFHHF +G+CSC DYW
Sbjct:  619 HVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.723e-29
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            Y LHD+DEE K  +L+YHSERLA+AY L+     +P+R++KNLR+C DCH AIKI+SK+  RE+I+RD  RFHHFR+G+CSC DYW
Sbjct:  620 YALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.940e-29
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            YVL ++D + K + ++YHSERLAIA+GLI+ P   P+R++KNLR+CGDCHNAIK MS    R +IVRDN RFH F DGKCSC DYW
Sbjct:  503 YVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588          
The following BLAST results are available for this feature:
BLAST of EH406505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP153_ARATH6.314e-4083.91Pentatricopeptide repeat-containing protein At2g15... [more]
PPR74_ARATH1.317e-3778.16Pentatricopeptide repeat-containing protein At1g47... [more]
PP168_ARATH4.846e-3269.41Pentatricopeptide repeat-containing protein At2g22... [more]
PP347_ARATH1.079e-3162.79Pentatricopeptide repeat-containing protein At4g33... [more]
PP301_ARATH1.410e-3164.71Pentatricopeptide repeat-containing protein At4g02... [more]
PP258_ARATH3.473e-3063.53Pentatricopeptide repeat-containing protein At3g26... [more]
PP354_ARATH4.535e-3064.71Pentatricopeptide repeat-containing protein At4g37... [more]
PPR84_ARATH1.320e-2961.63Pentatricopeptide repeat-containing protein At1g56... [more]
PPR25_ARATH1.723e-2961.63Pentatricopeptide repeat-containing protein At1g09... [more]
PP429_ARATH2.940e-2962.79Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2DC02FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406505 ID=EH406505; Name=EH406505; organism=Citrus sinensis; type=EST; length=433bp
CAAGATATGTGCTTCATGACATTGACGAAGAGGCAAAAGAGAAGGCCTTG
CAATATCATAGTGAGCGATTGGCAATTGCTTATGGTTTGATTAGCACTCC
ACCTAGAATGCCTCTTAGGATTATCAAGAACCTCAGAATCTGTGGTGACT
GTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGCTAATC
GTTCGGGACAACAAGCGGTTTCATCACTTCAGGGATGGCAAATGCTCATG
TGGAGACTATTGGTAAAGCTGTCAACTCGGCTTATTCATGAGAGACTGTC
AATCTAGAATATTACCGCATGAAGGAAGCCAAATTAACTTTTTTAAAGAG
ATTTACTTGTATGAAATTTTGTTGGTGTTGTACATTGTGCTTGTATGTGG
ATTCTAGTATCATTTCAATGCAAATTGAGTTAT
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