EH406504

Overview
NameEH406504
Unique NameEH406504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH406504 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 1.137e-11
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 DDGCPFQDALGEMVGRRTVPQVFINGKHI 87
            +DG   Q ALGE+VGRRTVPQVFINGKH+
Sbjct:   78 EDGWSIQTALGEIVGRRTVPQVFINGKHL 106

HSP 2 Score: 39.2762 bits (90), Expect = 1.137e-11
Identity = 17/25 (68.00%), Postives = 23/25 (92.00%), Query Frame = 2 
Query:   86 LPGSDDTVEAYESGKLAQLLGIAAS 160
            L GSDDTV+AYESG+LA+LLG++ +
Sbjct:  106 LGGSDDTVDAYESGELAKLLGVSGN 130
[Close]
BLAST of EH406504 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 3.225e-11
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 DDGCPFQDALGEMVGRRTVPQVFINGKHI 87
            +DG   QDAL +MVGRRTVPQVF++GKH+
Sbjct:   81 EDGWEIQDALSDMVGRRTVPQVFVHGKHL 109

HSP 2 Score: 39.2762 bits (90), Expect = 3.225e-11
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 2 
Query:   86 LPGSDDTVEAYESGKLAQLLGI 151
            L GSDDTVEAYESGKLA+LL I
Sbjct:  109 LGGSDDTVEAYESGKLAKLLNI 130
The following BLAST results are available for this feature:
BLAST of EH406504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GRXC4_ARATH1.137e-1175.86Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ3.225e-1168.97Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3AD03FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406504 ID=EH406504; Name=EH406504; organism=Citrus sinensis; type=EST; length=567bp
GATGATGGCTGCCCTTTTCAGGATGCCTTGGGTGAGATGGTTGGGCGGCG
CACTGTACCACAGGTGTTCATAAATGGAAAGCACATTGCCAGGCTCAGAT
GATACTGTTGAAGCTTATGAAAGTGGGAAACTAGCTCAGCTTTTAGGTAT
TGCAGCAAGCGGCAAAGATGATCTCTAATTGCTTCGAGATCAATGCCAAT
TGGGGATCTGTCTAAAGCTTTGATGCACTGCTCTGAAGAACGAGGATGAT
CTCTGAGGCAATAATAGGATTTCTATTATTAGTATTCAGGGTAAGTACTT
GTTGTGTAACTCTTTTTCTTTTACCTGGAAGTCAATTAGGGATATACATT
AATCATAATAAGTCACCGTTATCAAATTTTAACCGATACACGTGCATTTG
TCCGTTGTACCCCTTTTAGTGTTGTTGACAATTGTCACAGTTCATGGTGT
TCCCATATTTTACGAAAACCGGGGCTTTGTGCCCCATTTTTGTACCTTAN
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAC
back to top