CV884329

Overview
NameCV884329
Unique NameCV884329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN7_ARATH (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.004e-49
Identity = 94/164 (57.32%), Postives = 119/164 (72.56%), Query Frame = -3
Query:  313 NPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGAN--QRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRIRKMYVRLRNVQKWKRAR 798
            NP  Q GTDFIANN+IPGIDF T+HSYPD+W P SS++SQ  FLN WL  HIQDAQ+ L KPI+LAEFGKS+K  G    QRD +F+TVYS IY           G+FWQL   G+D+++DGY +I S++ ST  +I+ QS+KL  IRK++ R+ NV+KWKRAR
Sbjct:  254 NPPGQFGTDFIANNRIPGIDFVTVHSYPDEWFPDSSEQSQMDFLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKRGGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKIFARMINVEKWKRAR 417          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN1_ORYSJ (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.324e-44
Identity = 87/159 (54.72%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  331 NPN-FQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG--ANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRIRKMYVRLRNVQ 798
            NP+ +Q+GTDFIANNQ+PGIDFAT+HSYPDQWL    D++Q  F+  WL  HI DAQ  LRKP+L+AEFGKS K  G  + QRD L+ TVY+ IY           G+FWQL   G+DSYRDGYEV+F E PST  +IT  S++L  + K + R R  Q
Sbjct:  262 NPSGYQLGTDFIANNQVPGIDFATVHSYPDQWLSGKDDQAQLGFMGRWLDAHIADAQAVLRKPLLIAEFGKSWKDPGYSSGQRDALYGTVYAKIYESARRGGATVGGLFWQLLVPGMDSYRDGYEVVFGETPSTTGVITTNSRRLRFLSKAFARARQAQ 420          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN5_SOLLC (Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = -3
Query:  364 NPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQ--RDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRI 798
            NP +QVGTDFI+N+ I  IDFAT+H+Y DQWL   SD++Q  F+  W+ +H QDA++ L+KP++LAEFGKS +  G NQ  RD    T+Y  IY            + WQL  +G+++Y DGY +   +NPSTA IIT QS  +  +
Sbjct:  262 NPGYQVGTDFISNHLIKEIDFATIHAYTDQWLSGQSDDAQMIFMQKWMTSHWQDAKNILKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQSHAMTAL 408          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN2_SOLLC (Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum GN=MAN2 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = -3
Query:  364 NPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQ--RDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRI 798
            NP +QVGTDFI+N+ I  IDFAT+H+Y DQWL   SD++Q  F+  W+ +H QDA++ L+KP++LAEFGKS +  G NQ  RD    T+Y  IY            + WQL  +G+++Y DGY +   +NPSTA IIT QS  +  +
Sbjct:  262 NPGYQVGTDFISNHLIKEIDFATIHAYTDQWLSGQSDDAQMIFMQKWMTSHWQDAKNILKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQSHAMTAL 408          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN9_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 9 OS=Oryza sativa subsp. japonica GN=MAN9 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.036e-34
Identity = 63/147 (42.86%), Postives = 95/147 (64.63%), Query Frame = -3
Query:  373 QQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG--ANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKL 807
            + +NP + VGTDFIANN +P +DFAT+HSYPDQW+  +S + Q +F+  W+ +HI+D+   LRKP+L+ EFG S +++G     RD  F TVY A+Y           G+FWQ+   G++S+ DGYEV+   + STA ++  Q  ++
Sbjct:  255 KNFNPGYTVGTDFIANNLVPAVDFATIHSYPDQWVSGASSDEQVAFMRKWMADHIRDSAAVLRKPLLVTEFGWSARSNGYTVAARDAYFRTVYDAVYASAREGGACAGGLFWQVMAPGMESWTDGYEVVLERSKSTADVVAHQCARI 401          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN4_SOLLC (Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.305e-32
Identity = 66/151 (43.71%), Postives = 101/151 (66.89%), Query Frame = -3
Query:  364 QQYNPNFQV-GTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG--ANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRI 807
            +QYNPN  + GT+FI+NNQ+ GIDF T+H YP+QWLP  + E+Q  + + W+  HI D++  L+KP+L+AEFGKS KT G    +RD  F+ +Y  I+           G+FWQ+  +G+ S+ DGY+V+  E+PST+ +I  QS +L+++
Sbjct:  249 RQYNPNSYIFGTNFISNNQVQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSK-MLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKL 398          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN3_SOLLC (Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lycopersicum GN=MAN3 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 62/139 (44.60%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  382 NPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQS 798
            NP +QVGTDFI+N+ I  IDFAT+H+Y DQWL   SDE+Q +++  W+ +H +DA++ L+KP++LAEFGKS + SG   RD    +VY  +Y            + WQL   G+++Y DGY ++   NPST  II++Q+
Sbjct:  251 NPGYQVGTDFISNHLINEIDFATIHAYTDQWLSGQSDEAQLAWMEKWIRSHWEDARNILKKPLVLAEFGKSSR-SGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQA 388          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN3_ARATH (Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis thaliana GN=MAN3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.553e-30
Identity = 58/143 (40.56%), Postives = 93/143 (65.03%), Query Frame = -3
Query:  361 VGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGAN--QRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRIR 783
            +GTDFIAN+++  IDFA++HSYPD W P+  ++S+ + L  WL  H++DAQ+ L+KP++L EFGK   T G    QRD +F+  +  IY            +FW + ++G+++++D   ++ SEN +T  IIT++S+KL  IR
Sbjct:  262 LGTDFIANHKLDAIDFASIHSYPDLWFPNLDEKSRLNLLRKWLECHLEDAQNILKKPLILGEFGKPTNTPGYTQAQRDAVFNATFDTIYESAEKGGPAAGALFWHVISDGMNNFKDPLSIVLSENSTTVNIITEESRKLGLIR 404          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN1_SOLLC (Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.641e-30
Identity = 59/147 (40.14%), Postives = 92/147 (62.59%), Query Frame = -3
Query:  358 NPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRIRK 798
            NP +QVGTDFI+N+ I  IDFAT+H+Y DQW+   SD++Q  ++  W+ +H +DA++ L+KP++LAEFGKS  + G   RD    +VY  +Y            + WQL   G+++Y DGY ++  + PST  II+DQ+  +  + +
Sbjct:  250 NPGYQVGTDFISNHLINEIDFATIHAYTDQWVSGQSDDAQLVWMEKWITSHWEDARNILKKPLVLAEFGKS--SRGQGSRDIFMSSVYRNVYNLAKEGGTMAGSLVWQLMAHGMENYDDGYCIVLGQTPSTTQIISDQAHVMTALAR 394          
BLAST of CV884329 vs. ExPASy Swiss-Prot
Match: MAN1_ARATH (Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis thaliana GN=MAN1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.131e-29
Identity = 70/154 (45.45%), Postives = 90/154 (58.44%), Query Frame = -3
Query:  361 YNPNFQV--GTDFIANNQIPGIDFATLHSYPDQWLP--SSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG--ANQRDQLFDTVYSAIYXXXXXXXXXXXGMFWQLFTEGLDSYRDGYEVIFSENP-STATIITDQSQKLNRIR 801
            YNP  +V  GTDFI NNQIP IDFAT+H YPD WLP  SS    Q +F++ W+  HI+D  + ++KP+L+ EFGKS K  G    +R++ F  VY  IY           G+FWQL T       DGYEV     P +TA +I DQS KL  ++
Sbjct:  248 YNPGGRVLTGTDFITNNQIPDIDFATIHIYPDSWLPLQSSRTGEQDTFVDRWIGAHIEDCDNIIKKPLLITEFGKSSKYPGFSLEKRNKFFQRVYDVIYDSARAGGSCTGGVFWQLTTNRTGLLGDGYEVFMQAGPNTTAQLIADQSSKLKNLK 401          
The following BLAST results are available for this feature:
BLAST of CV884329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN7_ARATH2.004e-4957.32Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis ... [more]
MAN1_ORYSJ4.324e-4454.72Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa... [more]
MAN5_SOLLC6.919e-3446.26Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lyco... [more]
MAN2_SOLLC6.919e-3446.26Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lyco... [more]
MAN9_ORYSJ9.036e-3442.86Putative mannan endo-1,4-beta-mannosidase 9 OS=Ory... [more]
MAN4_SOLLC1.305e-3243.71Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lyco... [more]
MAN3_SOLLC1.884e-3144.60Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lyco... [more]
MAN3_ARATH3.553e-3040.56Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis ... [more]
MAN1_SOLLC4.641e-3040.14Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lyco... [more]
MAN1_ARATH5.131e-2945.45Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884329 ID=CV884329; Name=CV884329; organism=Citrus sinensis; type=EST; length=809bp
ATTTTATCATTCTGAACAGCGTCAGCTAAAATTAAAAAAATGGGTAAACT
CCATACAATTTATAAATAACACAATCCAATTAATCGTACTTTCGATAAAC
TCGCATAGAATTTATAAATAACACAATTCTATTAATCATACTTTCTTGGA
CAAACCAAATCCATCTCTAAGAGAGAATTCACTTCCTCAGGACACTATGA
AATTTCAGTAGCATTCAAGTTAGGAAACATCAAATTATCAAGCCTATTTG
TTTTGTCAGTTGCCGGTGCCATTGCTGCCGTTCCCAGCCCACCATTGAGC
TCTTCTGATATCCCTGGCTCTCTTCCATTTCTGAACGTTTCTCAGTCTGA
CATACATCTTTCGAATTCGATTGAGCTTCTGAGATTGGTCAGTGATGATG
GTTGCAGTCGAGGGGTTCTCACTGAAGATCACCTCATACCCATCACGGTA
AGAGTCTAATCCTTCGGTAAAAAGTTGCCAGAACATGCCACCAACAGCTG
CACCGCCACTCCTGGCTGACGAATAAATTGCCGAGTAGACCGTATCAAAC
AGCTGGTCCCTTTGGTTGGCACCAGAGGTTTTCAAAGATTTTCCAAACTC
CGCTAAGAGAATTGGCTTCCGAAGAGTGTCCTGTGCATCTTGGATATGAT
TGTAGAGCCAATTGTTCAAGAATGAAGTTTGGCTTTCATCACTGGAGCTG
GGAAGCCATTGATCTGGATAAGAATGAAGTGTAGCAAAATCAATGCCGGG
AATTTGATTGTTTGCAATGAAATCTGTTCCTACTTGAAAATTTGGATTGT
ATTGCTGCT
back to top