CV884316

Overview
NameCV884316
Unique NameCV884316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13446 contig Csv1_Contig13446:24..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.081e-32
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  136 SIVMATETQNLL-DTNGYGPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            ++VMA+   N+      YGPGSLK  QCPS+C RRC +TQYHK C+ FC KCC KCLCVPPG+YGNK VC CYNNWKT+ GGPKCP
Sbjct:   21 TMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.061e-28
Identity = 54/86 (62.79%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  142 VMATETQNLLDTN---GYGPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            +M  E Q     N   G   G L    C  +CT RCS+T Y KPCMFFCQKCCAKCLCVP G YGNK  CPCYNNWKTK GGPKCP
Sbjct:   27 IMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 45/68 (66.18%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  187 GPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            G   L+   C  +CT RCS T + KPCMFFCQKCCA CLCVP G YGNK  CPCYNNWKT+ G PKCP
Sbjct:   29 GYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 1
Query:  130 SISIVMATETQNLLDTNGYGPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            ++ +V    T +L+ T   G     S  C S+C  RCS+      C+ +C  CC +C CVP G YGNK  CPCY + K   G  KCP
Sbjct:    7 TLLLVTLVITPSLIQTTMAG-----SSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 1
Query:  187 GPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            G G +K   C  +C  RCS++   K C+  C  CC++C CVPPG  GN  +CPCY +  T  G  KCP
Sbjct:   33 GEGVVK-IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1
Query:  187 GPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            G G +K   C  +C  RCS++     C+  C  CC +C CVPPG  GN  +CPCY +  T+ G  KCP
Sbjct:   33 GEGVVK-IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CV884316 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 31/83 (37.35%), Postives = 40/83 (48.19%), Query Frame = 1
Query:  142 VMATETQNLLDTNGYGPGSLKSYQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFYGNKAVCPCYNNWKTKSGGPKCP 390
            ++  + +N    NGY     K   C S C  RC  ++  + C   C  CC +C CVPPG YGN   C CY +  T  G  KCP
Sbjct:   20 LVQADVENSQKKNGYA----KKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
The following BLAST results are available for this feature:
BLAST of CV884316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GASA4_ARATH2.081e-3266.28Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GAST1_SOLLC4.061e-2862.79Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC7.168e-2566.18Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
SNAK1_SOLTU3.124e-1239.08Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA2_ARATH1.550e-1144.12Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH5.891e-1142.65Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA1_ARATH7.694e-1137.35Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884316 ID=CV884316; Name=CV884316; organism=Citrus sinensis; type=EST; length=582bp
CTGAAGCCTCTTCCTATACAAAATCTCCTAAATTTCAGAAAGTGAGGCTT
TCTTCATTTGCTTGGTAGCAAATAGCTATTAATGGCCAAGGCTAAGCTTG
TCTTTGTCTTGCTTGTGGCAGCACTCTTTAGCATTTCCATTGTAATGGCA
ACTGAAACACAGAACCTTCTCGACACTAATGGATATGGCCCTGGGAGTCT
AAAGAGCTACCAATGCCCATCACAGTGCACAAGGAGATGTAGCCAGACGC
AGTACCACAAACCCTGCATGTTCTTCTGTCAAAAATGCTGTGCCAAGTGC
CTCTGCGTCCCTCCGGGGTTCTATGGGAACAAGGCTGTATGCCCTTGCTA
CAATAACTGGAAGACCAAGAGCGGAGGACCCAAATGCCCCTAAAATTTTA
CCTGTAATATCTCTGCTTTCACTAGTGTATTTCCTTAAATGGGAATTAGA
AGGTTATTTGGTTTGCTGGGGGTATGTTATTGTTTGTGTACGGAGTGGCT
GAAGATACGGCTCTGTTGCTGTTATATTTGTAATTTGCTTGCTTTGTTTA
TCAAATAATATTAGCAGAATTTTCTTCAAAAA
back to top