CV884314

Overview
NameCV884314
Unique NameCV884314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1955 contig Csv1_Contig1955:40..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.579e-85
Identity = 141/191 (73.82%), Postives = 165/191 (86.39%), Query Frame = 2
Query:  101 GDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            GD    ++S + + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+ HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYTLLA+IGEQFDHGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY+++IGFI HEDAK  D  +KN YT
Sbjct:   44 GDGNVDESSKSGVPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKLDRNAKNAYT 234          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.724e-84
Identity = 143/193 (74.09%), Postives = 162/193 (83.94%), Query Frame = 2
Query:   95 IVGDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            I  DD       A    PHPLEH+WTFWFDNP  KSKQATWGSS+R I+TFS+VE+FWSLYNNIHHPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT    +GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI H+DAK  D   KNRYT
Sbjct:   34 IADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYT 226          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.765e-82
Identity = 137/175 (78.29%), Postives = 157/175 (89.71%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            HPLEHSWTFWFDNP +KSKQA WGSS+R I+TFS+VEEFW LYNNI+HPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKELLDY D+IGFI H+DAK  D   K RYT
Sbjct:   43 HPLEHSWTFWFDNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELLDYKDSIGFIVHDDAKKMDKGLKERYT 217          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 295.434 bits (755), Expect = 2.762e-79
Identity = 134/193 (69.43%), Postives = 159/193 (82.38%), Query Frame = 2
Query:   95 IVGDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            I  D + S  + A     HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK  D   KNRYT
Sbjct:   22 IADDGDGSSAAAAGRITAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYT 214          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.988e-78
Identity = 135/222 (60.81%), Postives = 166/222 (74.77%), Query Frame = 2
Query:   35 DQTNTKNPNPSXXXXXXXXXIVGDDEP---------SKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            D   T +P+P          I GD++          SK ST V+Q+ H  ++SWTFWFDNP +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK+KIEPKWEDP+CANGGKW+++FPK   + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+NE AQ+SIGKQWKELL Y++TIGFI HEDAK  D  +K RYT
Sbjct:   18 DPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYT 239          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 3.376e-77
Identity = 133/222 (59.91%), Postives = 165/222 (74.32%), Query Frame = 2
Query:   35 DQTNTKNPNPSXXXXXXXXXIVGDDEP---------SKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 670
            D   T +P+P          I GD++          SK ST V+Q+ H  ++SWTFWFDNP +KS Q  WGSS+RS+YTF+++EEFWSLYNNIH P+K   G+D YCFK+KIEPKWEDP+CANGGKWT+ FP+   +++WL TLLA++GEQFD GDEICGAV+N R R ++ISLWTK A+NE AQ+SIGKQWKELL Y+DTIGFI HEDAK  D  +K RYT
Sbjct:   18 DPNTTTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVHEDAKTLDRDAKRRYT 239          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.558e-56
Identity = 98/188 (52.13%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  113 PSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYT 670
            P   +    + PH L   WTFW+D        A WG+S++  YTF +VEEFWS+Y+ I  PSKL+  ADF+ FK  +EPKWEDP CANGGKWTV    K   +T WL TL+A+IGEQFD  ++ICG V +VRAR +K++LWT+ ASNEA Q++IGK+WK+++DY+D I + FH+D+K D  S+  RYT
Sbjct:   28 PEAGAATEAKGPHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYTFHDDSKRDKPSRGGRYT 215          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.632e-55
Identity = 99/177 (55.93%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  146 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYT 670
            PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+ FK  +EPKWEDP CANGGKWTVI   K   DT WL T +A+IGEQFD   EICG V +VR RQ+K+SLWTK ASNEA Q+ IGK+WKE++DY+D + + FH+D++    S+  RYT
Sbjct:   32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFHDDSRSQKPSRGGRYT 208          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 5.245e-54
Identity = 94/177 (53.11%), Postives = 123/177 (69.49%), Query Frame = 2
Query:  131 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK 658
            A  + PH L   W FW+D        A WG+S+R  YTF +VEEFW LY+ I  PSK+ V ADF+ FK  +EPKWEDP CANGGKWTV    K   +  WL TL+A+IGEQFD  +EICG V +VR R +K++LWT+ ASNEA Q++IGK+WKE++DY+D + + FH+DAK +  S+
Sbjct:   24 AAAKAPHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDDAKREKPSR 200          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.595e-50
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 2
Query:  125 STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAK 640
            +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL   A+ + FK  +EPKWEDP CANGGKWT +    +    D  WL TL+A+IGEQFD  DEICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WKE+LD +D I F  H+D++
Sbjct:   18 ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNHDDSR 192          
The following BLAST results are available for this feature:
BLAST of CV884314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E1_ARATH2.579e-8573.82Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E1_ORYSJ3.724e-8474.09Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_MAIZE7.765e-8278.29Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_WHEAT2.762e-7969.43Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E4_ARATH3.988e-7860.81Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH3.376e-7759.91Eukaryotic translation initiation factor 4E-5 OS=A... [more]
IF4E2_MAIZE9.558e-5652.13Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_WHEAT3.632e-5555.93Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_ORYSJ5.245e-5453.11Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_ARATH4.595e-5051.98Eukaryotic translation initiation factor 4E-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884314 ID=CV884314; Name=CV884314; organism=Citrus sinensis; type=EST; length=878bp
AATGGCTGGAGAGAGCGATAACCCAAGAACTGAAGACCAAACAAACACCA
AAAACCCTAACCCTAGCGAAGAAGAGGAGCTGGAGGAAGGCGAGATCGTT
GGCGACGATGAGCCCTCGAAGAATTCAACCGCCGTGATGCAACAGCCGCA
TCCTCTCGAACACTCTTGGACCTTCTGGTTCGATAACCCTTTTGCCAAAT
CAAAACAAGCCACGTGGGGTAGCTCCATGCGCTCCATCTACACCTTCTCC
TCCGTTGAAGAGTTCTGGAGCCTTTACAACAATATACATCATCCGAGCAA
GTTGGCTGTGGGAGCAGACTTTTATTGTTTCAAGAATAAGATTGAGCCAA
AATGGGAGGACCCAGTTTGTGCTAATGGCGGGAAGTGGACTGTCATCTTT
CCTAAAGGAAAATCTGATACTTCTTGGCTGTATACGTTGCTGGCAATGAT
TGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTTGTAAATG
TTAGAGCTAGGCAGGAAAAGATATCTCTGTGGACCAAGAATGCTTCAAAT
GAAGCTGCTCAGATGAGCATTGGGAAACAGTGGAAGGAGTTGCTTGATTA
TAGTGACACCATAGGGTTCATCTTTCATGAGGATGCAAAGCATGACAACA
GGTCAAAGAATCGCTACACAACATAAACTGTACAGAGTTTTGCAGTGTAG
TCCCAGGAAATGCATTGTATTTTCTGGATGACAGTAGGCTTGTTAGTTGT
TATAGAGCTCTGAAACATTTTGCCATTTCCTGTTTTCTGTACTAATACCC
TCTTAAAAGGTTCTTTAAAGCACTAGCTGATTTTACCTTTGCAATATATT
TGAAGTTTGTTTAAAAAAAAAAAAAAAA
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