CV884313

Overview
NameCV884313
Unique NameCV884313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:957..1855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.518e-91
Identity = 160/212 (75.47%), Postives = 184/212 (86.79%), Query Frame = -1
Query:  226 MAVEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKVN 861
            MA+EICVKAAVGA D LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWF++ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFAS+GS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH YMK LF+L+SF+KTK E++YVI+GWAPKVN
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.666e-18
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.176e-18
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.176e-18
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 61/217 (28.11%), Postives = 107/217 (49.31%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y++  +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 59/224 (26.34%), Postives = 107/224 (47.77%), Query Frame = -1
Query:  274 SLNSAKMAVEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 879
            +L  +++A++  ++A      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y+   +A + F  T
Sbjct:  463 ALGCSRIAIKKYLRAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 685          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y+   +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17
Identity = 60/216 (27.78%), Postives = 100/216 (46.30%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPS----LTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +  Y+   +A + F  T
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGIWRYLNNAYARDEFINT 618          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.660e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y+   +A + F  T
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGIWRYLNNAYARDEFTNT 593          
BLAST of CV884313 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.475e-16
Identity = 59/216 (27.31%), Postives = 99/216 (45.83%), Query Frame = -1
Query:  274 VEICVKAAVGAXDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 855
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y+   +A + F  T
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 577          
The following BLAST results are available for this feature:
BLAST of CV884313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHAR1_ARATH2.518e-9175.47Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN1.666e-1829.03Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT2.176e-1829.03Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE2.176e-1829.03Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN1.411e-1728.11Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC6_HUMAN2.406e-1726.34Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC1_RABIT4.104e-1729.03Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_RABIT9.144e-1727.78Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC6_RAT2.660e-1627.78Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE3.475e-1627.31Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884313 ID=CV884313; Name=CV884313; organism=Citrus sinensis; type=EST; length=900bp
TTTAAATCATTTAATACCCGCAGGAGATATCCAGGAACTAAAGAGTAAAT
ACCATTCAACCAGGAGGTTTCATTATAACAAATAGCAAATATCATTGTAG
CTACCTTTATTGGATGATACAAACCCCCAGTGAACATTCTAATTATGCTC
CAAGTCTCACACATACATTACTCGCATTTCATTAGCTAGATTTCAAACAC
CGCATAGCTTAGAACTAGTTCATGCATTGACCTTCGGCGCCCATCCTGCA
ATCACGTATTGCTTTTCAGCCTTAGTCTTCTGAAAGGATTCCAGGGCAAA
AAGCTTCTTCATGTACCCATGGACATGAGCCAAGCTCTCAGGGACAGTCC
ACTGCTTGAAATGTTCAAGAGCTACCTGAAGGTGGTACAGCTTTGGTGCC
AAGCTCAAATCTACAGCAGTGACCTTCTCTCCAGCAATGAATGGACCTCC
ATGGGTCTTAAGATGCTCATCCAATGCTTTCAATTCCTCCAGCAAAGCTT
GCTCTGTCCCATCATTTGGGTCCTTGCTCTTCAAGAAATTGACAAAAGAT
GGGAATATCTTTGATCCAAGAGAGGCAAATTCAGGAGGATTGGTAAGAGA
AGGCTCAGGATACTTCTCCTCAACAATTCTAACAATCACATCAGAGTCAG
CCACCCACTTGTCATCAAACTTTACCACAGGTACTTTCCCTTCTGGGCTT
ATCTCCATAAACCATTGAGGCTTGTCACTGATATTGATCAGGTGACGCTT
GTATGGAACTTTCTTTTCCTCCAAAGTAAGCAAAGCTCTTTGGGAAAATG
GGCAGTCCCCGAGAATATCANGAGCGCCAACAGCGGCTTTCACACAAATC
TCCACGGCCATTTTTGCGGAATTGAGTGATCAGAGAGAGTGTCTGTTGCT
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