CV884311

Overview
NameCV884311
Unique NameCV884311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3330 contig Csv1_Contig3330:1..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_RAT (Sphingolipid delta(4)-desaturase DES1 OS=Rattus norvegicus GN=Degs1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.974e-59
Identity = 100/193 (51.81%), Postives = 134/193 (69.43%), Query Frame = -2
Query:  284 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATKKSE 862
            HHR+ G DGID+DIP+  E       + K +WVI Q LFYAFRP+F+ PKP  + E IN  IQ+  D+ + Y +G KS  Y++ ++ +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR P   +  E
Sbjct:  131 HHRYLGADGIDVDIPTDFEGWFFCTTLRKLVWVILQPLFYAFRPLFINPKPITHLEVINTVIQVTFDVLVYYVFGVKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPLVRKIASEYYDNLPHYNSWIRVLYDFVMDDTISPYSRMKRPPKGNEIQE 323          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_PONAB (Sphingolipid delta(4)-desaturase DES1 OS=Pongo abelii GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.611e-58
Identity = 102/184 (55.43%), Postives = 129/184 (70.11%), Query Frame = -2
Query:  311 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKR 862
            HHR+ G DG+D+DIP+  E         K IWVI Q LFYAFRP+F+ PKP  Y E IN   Q+  DI I YF G KS  Y++ ++ +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR
Sbjct:  131 HHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPKPITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVMDDTISPYSRMKR 314          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_MICFO (Sphingolipid delta(4)-desaturase DES1 OS=Microtus fortis GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.611e-58
Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = -2
Query:  293 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATK 862
            HHR+ G DGID+DIP+  E         K +WVI Q LFYA RP+F+ PKP  Y E IN   QI LDI + Y +G KS  Y++ ++ +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR P  ++
Sbjct:  131 HHRYLGADGIDVDIPTDFEGWFFCTTFRKLVWVILQPLFYALRPLFINPKPITYLEIINTVTQIILDIIVYYVFGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPLVRKIAAEYYDKLPQYNSWIKVLYDFVMDDTISPYSRMKRPPKGSE 320          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_HUMAN (Sphingolipid delta(4)-desaturase DES1 OS=Homo sapiens GN=DEGS1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.611e-58
Identity = 102/184 (55.43%), Postives = 129/184 (70.11%), Query Frame = -2
Query:  311 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKR 862
            HHR+ G DG+D+DIP+  E         K IWVI Q LFYAFRP+F+ PKP  Y E IN   Q+  DI I YF G KS  Y++ ++ +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR
Sbjct:  131 HHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPKPITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVMDDTISPYSRMKR 314          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_MOUSE (Sphingolipid delta(4)-desaturase DES1 OS=Mus musculus GN=Degs1 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.410e-58
Identity = 102/190 (53.68%), Postives = 130/190 (68.42%), Query Frame = -2
Query:  293 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATK 862
            HHR+ G D ID+DIP+  E         K +WVI Q LFYAFRP+F+ PKP  Y E IN  IQI  DI I Y +G KS  Y++ +T +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++ D T+ P+SRMKR P   +
Sbjct:  131 HHRYLGADKIDVDIPTDFEGWFFCTTFRKFVWVILQPLFYAFRPLFINPKPITYLEIINTVIQITFDIIIYYVFGVKSLVYMLAATLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIASEYYDDLPHYNSWIKVLYDFVTDDTISPYSRMKRPPKGNE 320          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_BOVIN (Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.922e-58
Identity = 102/184 (55.43%), Postives = 127/184 (69.02%), Query Frame = -2
Query:  311 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKR 862
            HHR+ G DGID+DIP+  E         K IWVI Q LFYAFRP+F+ PKP  Y E IN  IQI  DI + Y  G KS  Y++ ++  G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++ D T+ P+SRMKR
Sbjct:  131 HHRYLGADGIDVDIPTDFEGWFFCTTFRKFIWVILQPLFYAFRPLFINPKPISYLEIINTVIQITFDIVVYYVLGVKSLVYMLAASLFGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVTDDTISPYSRMKR 314          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_CHICK (Sphingolipid delta(4)-desaturase DES1 OS=Gallus gallus GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.020e-55
Identity = 97/193 (50.26%), Postives = 127/193 (65.80%), Query Frame = -2
Query:  284 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATKKSE 862
            HHR+ G DGID+DIP+  E         K IW++ Q  FYA RP+ + PKP    E IN   Q+  DI I Y WG KS  Y++  + +G G+HP++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  V+++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR+     K +
Sbjct:  131 HHRYLGGDGIDVDIPTNFEGWFFCTRFRKFIWIVLQPFFYAIRPLCINPKPITRLEIINLLAQLFFDIVIYYLWGAKSIFYMLAGSVLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVKKIAAEYYDNLPQYNSWIKVLYDFVMDDTISPYSRMKRQLKGEVKQD 323          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS1_XENTR (Sphingolipid delta(4)-desaturase DES1 OS=Xenopus tropicalis GN=degs1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.655e-54
Identity = 95/193 (49.22%), Postives = 129/193 (66.84%), Query Frame = -2
Query:  284 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATKKSE 862
            HHR+ G DG+D+DIP+  E       + K +W+I Q LFY  RP+ + PKP    E IN  +Q + D  I Y  G K+  Y+++ + +G G+HP++GHFI+EHY+F    ETYSYYGPLN+LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKRK     K E
Sbjct:  131 HHRYLGGDGVDVDIPTDFEGWFFCTPLRKLVWIILQPLFYTIRPLCINPKPITRLEIINLVVQFSFDALIYYTLGGKALFYMLVGSILGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNYLTFNVGYHNEHHDFPSVPGKNLPLVRKIAAEYYDPLPKYSSWVKVLYDFVMDDTLSPYSRMKRKLKGDLKLE 323          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS2_RAT (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Rattus norvegicus GN=Degs2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.004e-50
Identity = 87/190 (45.79%), Postives = 129/190 (67.89%), Query Frame = -2
Query:  293 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATK 862
            HHR+ G DG+D+DIP+  E         K +W++ Q  FY+ RP+++ PK     E +N  +Q+A ++TI   WG K+  YL+ S+ +G G+HP++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IPG  L  VR +APEYY  L  + SW +V++ ++ + ++GP+SR+KRK    K
Sbjct:  131 HHRYLGGDGLDVDIPTDFEGWFFCTPARKLLWLVLQPFFYSLRPLYVNPKAVTRMEILNALVQLAFNVTIFALWGIKAIVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGCYLPLVRMIAPEYYDHLPQHHSWVKVLWDFVFEDSLGPYSRVKRKCKLAK 320          
BLAST of CV884311 vs. ExPASy Swiss-Prot
Match: DEGS2_MOUSE (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Mus musculus GN=Degs2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.004e-50
Identity = 88/190 (46.32%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  293 HHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATK 862
            HHR+ G DG+D+DIP+  E         K +W++ Q  FY+ RP+ + PK     E +N  +Q+A D+TI   WG K   YL+ S+ +G G+HP++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IPG  L  VR++APEYY  L  + SW +V++ ++ + ++GP+SR+KRK    K
Sbjct:  131 HHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPKVVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFEDSMGPYSRVKRKCKLAK 320          
The following BLAST results are available for this feature:
BLAST of CV884311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEGS1_RAT8.974e-5951.81Sphingolipid delta(4)-desaturase DES1 OS=Rattus no... [more]
DEGS1_PONAB2.611e-5855.43Sphingolipid delta(4)-desaturase DES1 OS=Pongo abe... [more]
DEGS1_MICFO2.611e-5853.16Sphingolipid delta(4)-desaturase DES1 OS=Microtus ... [more]
DEGS1_HUMAN2.611e-5855.43Sphingolipid delta(4)-desaturase DES1 OS=Homo sapi... [more]
DEGS1_MOUSE3.410e-5853.68Sphingolipid delta(4)-desaturase DES1 OS=Mus muscu... [more]
DEGS1_BOVIN9.922e-5855.43Sphingolipid delta(4)-desaturase DES1 OS=Bos tauru... [more]
DEGS1_CHICK6.020e-5550.26Sphingolipid delta(4)-desaturase DES1 OS=Gallus ga... [more]
DEGS1_XENTR6.655e-5449.22Sphingolipid delta(4)-desaturase DES1 OS=Xenopus t... [more]
DEGS2_RAT2.004e-5045.79Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]
DEGS2_MOUSE2.004e-5046.32Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884311 ID=CV884311; Name=CV884311; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTCAGAATCAGAAATCGTGAAGATCGTCTTCACAATACAAACG
GCAACACGAAGCCAAAATTCTGCTACATAACATATAGAAAGAACAGTTTA
AAAGTAATGAAAACTGAGTCATCCCTTCAGTCTAAAACCAGAGTATGTAA
TTTCTAATTCCTCAAAGAATGTTACATATAATAGGAACCAAAAAATAAAA
ATGATAATTACTGTGGCAACTCATTTTGAACTAAAGGTTGGAGGAGAAGG
AATTGAACCAAAAAGTAGAGATGGGAGCACCTATTCGGATTTCTTTGTTG
CAGAAGGCTTTCTCTTCATTCGGCTAAAGGGGCCGACTGTCCTATCCATA
ATATACATATATATAACCTGGCTCCAAGATTTATAAGATGCTAAACCCTG
ATAATACTCAGGTGCAACCTCCCTGACCTTGTGGAGCTTGTTTCCAGGAA
TTCTTGGGAAATCATGGTGCTCATTGTGGTATCCCACATGCCACGTTAGA
AAATTGAGGGGGCCATAGTAAGAATATGTCTCCTGGTCAGGGTTGAAGAC
ATAATGTTCTGAAATGAAGTGACCAGCCATGGGGTGCATCCCACCCCCAA
CAAATGTGGAAAGGATCAAATAAGCAAAAGATTTCCATCCCCAAAAGTAA
ACAATGGTTATGTCAAGAGCTATCTGAATAGAGAAGTTAATGAACTCCCA
ATAACCAGGTGGCTTCGGTTTGAGAAATACAGGTCGGAAAGCATAGAAGA
GGAGTTGGAAGATGACCCATATGGATTTTGCAACAACATTTGTGACCATT
CGGGTTTCAGTTAGGCTTGGTATGTCCATGTCAATACCATCTACTCCTTG
AAAGCGATGGTGC
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