CV884308
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_RAT (DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.611e-23 Identity = 67/180 (37.22%), Postives = 92/180 (51.11%), Query Frame = 2 Query: 266 KQAKGRDKAHNGSSLASSSRANNFSKLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPK-----KCPKVEKQ-----SPSRPTSFTSSKSKASNPSKEKFSPSE 772 K G+ + + + K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW + T L+CAF NTPK+ QV G IV KEW+L+CY ++ + YLM G SH S E PK PK + Q SP RP T ++KA +P + S ++ Sbjct: 293 KAVPGKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPRKRPQPKAKTQAAGPSSPPRPP--TPEETKAPSPGPQDNSDTD 470
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_MOUSE (DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 7.596e-23 Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 278 GRDKAHNGSSLASSSRANNFSKLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPK-----KCPKVEKQ-----SPSRPTSFTSSKSKASNPSKEKFSPSE 772 G+ + + + K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW + T L+CAF NTPK+ QV G IV KEW+L+C++ ++ + YLM G SH S E PK PK + Q SP RP T ++KA +P + S +E Sbjct: 297 GKPRGEGTEPRGARTGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHHMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPQKRPQPKAKTQAAGPSSPPRPP--TPKETKAPSPGPQDNSDTE 470
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_HUMAN (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.596e-23 Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 2 Query: 341 KLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPKKCPKVEKQSPSRPTSFTSSKSKASNPSKEK 757 K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW + T L+CAF NTPK+ QV G IV KEW+L+C+ ++ + YLM G + SH + G K P+ + Q+ ++PT S P+ E+ Sbjct: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEEDEASH-SGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEE 456
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_CRIGR (DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.097e-21 Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 2 Query: 341 KLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHAGKPWRKSYISHKTSQEGSPPKKCPKVEKQSPSRPTSFTSSKSKASNPSKEKFSPS 769 K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW + T L+CAF NTPK+ QV G IV KEW+L+CY ++ + YLM AG S +E P + + E SR +K++A+ PS + P+ Sbjct: 319 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRLRRRLPSRRYLM-AGLG------SSSEDEEDDSPGESGEDEAPKLSRKRPQAKAKTQAAGPSSPQRPPT 454 The following BLAST results are available for this feature:
BLAST of CV884308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884308 ID=CV884308; Name=CV884308; organism=Citrus sinensis; type=EST; length=837bpback to top |