CV884308

Overview
NameCV884308
Unique NameCV884308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3329 contig Csv1_Contig3329:1..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_RAT (DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.611e-23
Identity = 67/180 (37.22%), Postives = 92/180 (51.11%), Query Frame = 2
Query:  266 KQAKGRDKAHNGSSLASSSRANNFSKLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPK-----KCPKVEKQ-----SPSRPTSFTSSKSKASNPSKEKFSPSE 772
            K   G+ +        + +      K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW  + T L+CAF NTPK+ QV    G IV KEW+L+CY  ++ +    YLM   G        SH  S E   PK       PK + Q     SP RP   T  ++KA +P  +  S ++
Sbjct:  293 KAVPGKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPRKRPQPKAKTQAAGPSSPPRPP--TPEETKAPSPGPQDNSDTD 470          
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_MOUSE (DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.596e-23
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  278 GRDKAHNGSSLASSSRANNFSKLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPK-----KCPKVEKQ-----SPSRPTSFTSSKSKASNPSKEKFSPSE 772
            G+ +        + +      K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW  + T L+CAF NTPK+ QV    G IV KEW+L+C++ ++ +    YLM   G        SH  S E   PK       PK + Q     SP RP   T  ++KA +P  +  S +E
Sbjct:  297 GKPRGEGTEPRGARTGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHHMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPQKRPQPKAKTQAAGPSSPPRPP--TPKETKAPSPGPQDNSDTE 470          
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_HUMAN (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.596e-23
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  341 KLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHA-GKPWRKSYISHKTSQEGSPPKKCPKVEKQSPSRPTSFTSSKSKASNPSKEK 757
            K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW  + T L+CAF NTPK+ QV    G IV KEW+L+C+  ++ +    YLM   G    +   SH +   G    K P+ + Q+ ++PT      S    P+ E+
Sbjct:  318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEEDEASH-SGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEE 456          
BLAST of CV884308 vs. ExPASy Swiss-Prot
Match: XRCC1_CRIGR (DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.097e-21
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  341 KLLEGVVFVLSGFVNPERSTLRSRAIEMGADYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKKLVDIDSYLMHAGKPWRKSYISHKTSQEGSPPKKCPKVEKQSPSRPTSFTSSKSKASNPSKEKFSPS 769
            K+L+GVV VLSGF NP RS LR +A+E+GA Y+ DW  + T L+CAF NTPK+ QV    G IV KEW+L+CY  ++ +    YLM AG        S    +E   P +  + E    SR      +K++A+ PS  +  P+
Sbjct:  319 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRLRRRLPSRRYLM-AGLG------SSSEDEEDDSPGESGEDEAPKLSRKRPQAKAKTQAAGPSSPQRPPT 454          
The following BLAST results are available for this feature:
BLAST of CV884308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XRCC1_RAT2.611e-2337.22DNA repair protein XRCC1 OS=Rattus norvegicus GN=X... [more]
XRCC1_MOUSE7.596e-2337.50DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 ... [more]
XRCC1_HUMAN7.596e-2340.71DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 ... [more]
XRCC1_CRIGR1.097e-2141.26DNA repair protein XRCC1 OS=Cricetulus griseus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884308 ID=CV884308; Name=CV884308; organism=Citrus sinensis; type=EST; length=837bp
TTTCGTTTGTGGCGTAGGGGAAAAAAAAAAAAGAAAGGCAGTTTATTATA
GGTGGAATACCCATGCTGATCTTTATGGAACAAGTGTACTGAACTCTGAG
TTTGATATGTCTGATTCAAATACAAGTTCAGGTAATGGTAACAATAAGAC
CCAAAAGCGAAATCTTCCTTCATGGATGACTTCAAGTGAGAATGAGAGTA
ACTCTCATGGAAAGAAACCAACTGATACTGATGAAAATGAGGAGAACCAA
AAAGATGAGAAAACCAAGCAAGCTAAAGGGCGTGATAAAGCACATAATGG
CAGTAGCCTTGCTTCCAGTTCGCGTGCCAACAACTTTTCCAAACTTCTGG
AAGGAGTTGTCTTTGTATTATCTGGGTTTGTTAATCCGGAGAGAAGTACA
TTGAGGTCCCGGGCTATTGAAATGGGAGCAGATTATCAAGCTGATTGGAA
CTCAAATTGCACACTCTTGGTTTGCGCTTTTCCAAATACCCCAAAGTTTC
GGCAGGTTGAGGCAGATTGTGGTACAATTGTTTCAAAGGAATGGATATTA
GAATGTTATAACCAGAAGAAGCTTGTTGATATTGATAGTTACCTCATGCA
TGCTGGGAAGCCATGGCGGAAAAGCTATATTTCCCATAAAACTAGCCAAG
AAGGATCCCCACCTAAAAAATGTCCGAAGGTTGAAAAACAATCACCATCC
AGGCCAACTTCCTTCACATCCTCCAAGAGTAAAGCTTCTAATCCATCTAA
AGAGAAATTTTCTCCCTCTGAACTTAAGAAATGGGCTGCTGATGATTTGA
AAAAGACCATATCATGGTTAGAGAGTCAAGAGGAAAA
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