CV884305

Overview
NameCV884305
Unique NameCV884305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:624..1481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.807e-113
Identity = 191/202 (94.55%), Postives = 198/202 (98.02%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWE+QVGP+VGISAGD+LWV+RYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGGFEVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  155 GPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 6.254e-113
Identity = 191/202 (94.55%), Postives = 199/202 (98.51%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+SFDPKPIQGDWNGAGAH NYSTKSMRNDGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  155 GPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 1.067e-112
Identity = 188/202 (93.07%), Postives = 198/202 (98.02%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVVLS DPKPIQGDWNGAGAH NYSTKSMRN+GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  155 GPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 399.053 bits (1024), Expect = 1.703e-110
Identity = 185/202 (91.58%), Postives = 198/202 (98.02%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MR DGG+EVIKKAI+KLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  155 GPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 4.955e-110
Identity = 187/202 (92.57%), Postives = 195/202 (96.53%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG GADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  155 GPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 8.452e-110
Identity = 182/202 (90.10%), Postives = 195/202 (96.53%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTGKHET DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  155 GPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 5.479e-109
Identity = 184/202 (91.09%), Postives = 195/202 (96.53%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCGVGADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITE+AGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+E IK AI+KLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  155 GPYYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 7.155e-109
Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GA+KA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISA D+LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTGKHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  155 GPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 9.345e-109
Identity = 182/202 (90.10%), Postives = 194/202 (96.04%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCG+GADK++GRD+VDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA D++WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  155 GPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356
[Close]
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.082e-108
Identity = 180/202 (89.11%), Postives = 196/202 (97.03%), Query Frame = -2 
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYCGVGADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITE+AG V+SFDPKPI GDWNGAGAH+NYSTKSMR +GG+EVIKKAIEKLGLRH EHIAAYG+GNERRLTG+HETADINTF WGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  155 GPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITELAGAVVSFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
The following BLAST results are available for this feature:
BLAST of CV884305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_VITVI2.807e-11394.55Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_VITVI6.254e-11394.55Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_ALNGL1.067e-11293.07Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_LOTJA1.703e-11091.58Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_VIGAC4.955e-11092.57Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA3_MEDSA8.452e-11090.10Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_PHAVU5.479e-10991.09Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA3_PHAVU7.155e-10992.08Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLN11_ARATH9.345e-10990.10Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA2_PHAVU2.082e-10889.11Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884305 ID=CV884305; Name=CV884305; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTGACAAAGGATTGACCCTTCCATAATGTTATTAAATTAAATGTTT
ACATTATTCAACCCAATATGACAGCAGGAAGCAAAGAACCCACTGTTGCA
AATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAATA
AAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAGT
AAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATTC
ATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATAT
GGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTTC
TTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACAC
CCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCGG
CGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTCC
AAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTCA
TCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACCC
TGAATTGGCTTGGGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAAT
CCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATTC
CAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCCA
TTGATGCCACTGATGTTGATTCCTGCATATAGACAGGCCTTGTAATGGGA
GTCCACAATGTCACGCCCCCAAGCTTTGTCAGCACCAACACCACAGTAGT
ATGGTCCC
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