CV884298

Overview
NameCV884298
Unique NameCV884298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3328 contig Csv1_Contig3328:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.215e-44
Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 1
Query:  139 ISVLTLAIATLLFWASFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIAAS 513
            IS++ L +A + F +  S A A S EA FV+KTISSHKIVIFSKSYCPYC++AKSVF+EL+  P+VVELDER+DGW+IQ ALGE+VG+RTVPQVFINGKH+GGSDDTV+AYESG+LA+LLG++ +
Sbjct:    7 ISMVMLLVALVTFISMVSSA-ASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSGN 130          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.643e-39
Identity = 79/120 (65.83%), Postives = 101/120 (84.17%), Query Frame = 1
Query:  154 LAIATLLFWASF-SGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMA--PHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGI 504
            +A A L+  A+  S AS  +S+++FV+ T+ +H +VIFSKSYCPYCRRAK+VFKEL +   P+VVELD+R+DGW IQDAL +MVG+RTVPQVF++GKH+GGSDDTVEAYESGKLA+LL I
Sbjct:   11 MAAAALIALAALGSAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNI 130          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.648e-29
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  190 SGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            + A A +S +AFV+  I S+KIVIFSKSYCPYC R+K +F +L   P VVELD+R+DG  IQ  L E VG+RTVPQVF+NGKHIGGSDD   A ESG+L +LL
Sbjct:   25 NSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  142 SVLTLAIATLLFWASFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIAAS 513
            + + +A+  LL  A    A+A  S +AFV+  I S++I IFSK+YCPY  RAK +F++L   P++VELD R+DG  IQ  L ++VG+ TVPQVF+NG+H+GGSDDT  A+ +G+L +LLG + S
Sbjct:    6 AAVPIAVFLLLVLAEADPAAATRSPSAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNSQS 129          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  220 AFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL----GIAASGK 519
            A  ++T++S  +V++SKSYCP+C R K +F++L      +ELD   DG  +Q AL E  GQRTVP VFINGKHIGG DDT+     GKL  LL     IA+S K
Sbjct:    4 AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSAK 107          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  226 VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            V+  I +HK++IFSK+ CPYC   K +FK+L + P VVELD   DG  +Q A G++ G RTVPQVFIN K IGG D T + +  GKL  LL
Sbjct:    4 VKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLL 94          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  229 EKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIAASGK 519
            ++ +SS+ +V+FSK++CPYC   K +  +L     V+ELD   DG ++Q+AL E  GQRTVP VFI GKHIGG D T   ++ GKL  LL  A + K
Sbjct:    7 QELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAVK 103          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  229 EKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            ++ +SS+ +V+FSK+YCPYC   K +  +L     VVELD   DG  IQ AL E  GQRTVP VFI GKHIGG D T   +  G+L  LL
Sbjct:    7 KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLL 96          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  187 FSGASAKSSEAAFV----EKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            FSG      E   V    ++ +S++ +V+FSK+YC YC+R K +  +L     V+ELDE  DG  IQ AL E  GQ TVP VFI G HIGG D  +E  + GKL  LL
Sbjct:    5 FSGNRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  238 ISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            I   ++VIFSKSYCP+  R K +F  L +  +V+ELD+ DDG  +Q+ L E+  Q+TVP +F+N  H+GG D T +AY+SG L +LL
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLL 260          
The following BLAST results are available for this feature:
BLAST of CV884298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC4_ARATH2.215e-4469.60Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ1.643e-3965.83Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ARATH7.648e-2962.14Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ9.988e-2949.19Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC6_ORYSJ9.055e-2250.00Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_DICDI2.230e-2052.75Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX_VERFO3.804e-2047.42Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_RICCO1.107e-1951.11Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC1_ARATH4.206e-1945.37Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
TRXR3_HUMAN5.494e-1948.28Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884298 ID=CV884298; Name=CV884298; organism=Citrus sinensis; type=EST; length=746bp
GACGTTATAATGAGAATTTATGCGCTAATAGGCATTTACAAAAACATCTA
AAAACCAACTCCGCTGCCTGCACCTCTTCTGCGCGGTCTCCGGTGCAGCA
TCAGACTCATCATGACGGCGAGAAGACTAACACCAATGATCTCAGTACTA
ACGTTAGCGATTGCGACGCTTCTCTTCTGGGCATCATTTTCCGGAGCTTC
TGCCAAATCTTCAGAAGCTGCTTTTGTCGAAAAGACTATCTCTTCCCACA
AGATCGTCATCTTCTCCAAGTCTTATTGCCCATATTGTAGGAGGGCTAAA
TCTGTATTCAAAGAGTTGAACATGGCTCCTCATGTAGTCGAGCTTGATGA
GAGAGATGATGGCTGGAACATTCAGGATGCCTTGGGTGAGATGGTTGGGC
AGCGCACTGTACCACAGGTGTTCATAAATGGAAAGCACATTGGAGGCTCA
GATGATACTGTTGAAGCATATGAAAGTGGGAAACTAGCTCAGCTTTTAGG
TATTGCAGCAAGTGGCAAAGATGATCTCTAATTGCTTCGAGATCAATGCC
AATTGGGGATCTGTCTAAAGCTTCGATGCACTGCCCTGAAGAATGAGGAT
GATCTCTGAGGCAATAATAGGATTTCTATTATTAGTATTCAGGGTAAGTA
CTTGTTGTGTAACTCTTTGTTTTACCTGGAAGTCAATTAGGGATATACAT
TAATCATAATAAGTAAGTCATCGTTATCAAATTTTAACCAAAAAAA
back to top