CV884291

Overview
NameCV884291
Unique NameCV884291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10160 contig Csv1_Contig10160:228..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.186e-27
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            G+ D VLQK LDYACG GADCNP H  G C+NP+ V+AHC+YAVNS+FQ+KGQA  SC+F+G+AT+ TTDPS  GC
Sbjct:   27 GLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGC 102          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.934e-23
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            G+ D VLQ  LDYACG GADCNP      C+NP+ V++HC+YAVNS+FQ+KGQ+ GSC+F G+AT   +DPS  GC
Sbjct:   27 GLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGC 102          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  628 DPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTA 840
            + VLQKA+DYACG GADC  I   G CY PNTVK HC  AVNSY+Q+K  +  +CDF+G+A+ +TT PSTA
Sbjct:   29 EQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA 99          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            GV    LQ ALD+ACG G ++C+ I     CY PN VK H S+A NSY+Q++G+A GSCDF G A + TTDPS   C
Sbjct:  278 GVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSC 354          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  622 VLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 834
            +LQ ALD+ACG G  DC+ +     CY P+ V AH +YA N+Y+Q+ G+A GSCDF G ATV TTDPS   C
Sbjct:  371 MLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTC 442          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            G     LQ  ++YACG   DC PI S G C++PN+++AH SY +N+Y+Q  G    +CDF G+  V ++DPS  GC
Sbjct:  383 GANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            G  +  LQ +LD+ACG G DC  I   G C+ PN V +H +YA+N YFQ+  +    CDFS +ATV + +PS   C
Sbjct:  370 GATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNC 445          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  622 GVGDPVLQKALDYACGAGA-DCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 849
            G    +LQ ALD+ACG G  DC+PI     CY P+ V AH +YA ++Y+ + G    +C+F+G A++ TTDPS   C
Sbjct:  374 GADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTC 450          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = -1
Query:  622 DPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 840
            D  L   L++ACG G A+C  I    PCY PN VK+H S+A N Y+Q+   A G+CDF G+A   T DPS   C
Sbjct:  371 DDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTC 444          
BLAST of CV884291 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = -1
Query:  622 LQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 831
            LQ ALD+ACG G  DC+ +  + PC+ P+TV +H SYA N+Y+Q+ G +   C F+G++     DPS   C
Sbjct:  403 LQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNC 473          
The following BLAST results are available for this feature:
BLAST of CV884291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
E13L3_ARATH5.186e-2767.11Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH5.934e-2359.21Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH2.756e-2060.56Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH1.280e-1753.25Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH3.154e-1654.17Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13B_WHEAT1.014e-1444.74Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH8.588e-1444.74Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH1.913e-1344.16Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH1.240e-1247.30Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1312_ARATH2.115e-1243.66Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884291 ID=CV884291; Name=CV884291; organism=Citrus sinensis; type=EST; length=849bp
CTGAAGTGATAAATAACTGCTTTCTCGATCAAGATGTACAAAACAGGAAA
CAAAAAAGTGATAAAGAGAGAGAAAGTACTTCCACTCGCCGAAAAGGAAC
TAGAAAGCTCATCATCTCTTTTTGACAAGTAGAAGAGGAAAACAAAAAGA
AACTTAGCCAGCTAATTAAGGTGTCTTTAGATAATTAACAACACAATCAC
ATGCATACTCCATCTCTGCACATTGAGATCCAGTATTAAGGACACCGACT
ATAGTACCACATCTCCATCCTAGTAGATGTCATGTTGATTGTTTCTTTCA
ACCCCACAAGAGCATCGAGCCTGAGAACAAGAGGACGACCAAAAAAGACA
AGGCAGAGTTTTGCAGTCTCATCCCACCATGACTATAGTCTGTGTTGGGC
ATACCAGATCCCGAAGGGCCTAAACCAGGACCAACTCCTCCCAACACTCC
AGTTCCAGTTGATGGTGTGGTGGTGTACGGAGTGGTGCTGCCTGGTGTGT
TAGTCGTTGGAGTGGTAGTGGACGGAGTTGTTGTGGGTGTGGTTGTGCCT
GGAGTACCTGTGACTGGTGTTGTTGGGGAAGTTGTGGTGGTGCCTGAAGT
GCTGGCACTTGAAGGATAAGAACAGCCAGCAGTGCTGGGATCGGTAGTGG
CAACGGTTGCACTTCCGGAAAAATCACAAGAGCCTTGAGCTTGACCCTTT
CTCTGGAAATAGCTGTTGACAGCATAACTGCAGTGAGCTTTGACAGTGTT
GGGGTTGTAACAAGGCCCATTGGAATGGATAGGGTTACAATCAGCCCCAG
CTCCACAAGCATAGTCCAAAGCTTTTTGTAAAACTGGGTCACCCACTCC
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