CV884279

Overview
NameCV884279
Unique NameCV884279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:252..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884279 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.463e-52
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:  442 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISALEGAESTVIMASGMCASTVMLLALVPAGGHIVTTTD 795
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISALEGAEST++MASGMCASTVMLLALVPAGGHIVTTTD
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTD 279

HSP 2 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  100 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 285
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of CV884279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH2.463e-5288.98Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002D05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884279 ID=CV884279; Name=CV884279; organism=Citrus sinensis; type=EST; length=797bp
AGCCGCCGTTCATACGACGTCGTAATGGCCGTGTCCTCATGTTCGAGTCA
AAAAATTTTGTCCTTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCG
ATCCCGACTTCTCGGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCG
GCGCGAGTCATCGGAGCGTCGACGGCGTCGTTTAGCGGCCTGTCGTCTCT
GATTTTCAGGTTTCCGCCGAACTTCGTGCGCCAGCTTAGCACGAAGGCCA
GGAGGAACTGCAGCAACATCGGCGTGGCGCAAATCGTGGCGGCTTCGTGG
TCGAACGGTGTGGGTTCCGGCTCTAACTCGGCGGCGGCTGCAGCAGCTTC
CGCTGCCCCCGCCCCGCCCGTCCCCGTCGAGATTACGAGCGGCGATGACA
TCGCGCTTGTTGACGGATTGAAAAATGTACATCTGGAGGCCCTCGCTGAT
TTGAAAAACGAGGCTTCGTTTTTGAGCTCCGATGGGAGCCTTGCAATTCA
TGCCGGTGAAAGATTAGGTCGTGGTATAGTAACAGATGCAATTACTACCC
CAGTGGTGAATACTTCTGCTTACTTCTTTAAGAAAACTGCTGAGCTTATT
GATTTCAAGGAGAAACGTCGTGCAAGTTTTGAATATGGGAGGTATGGAAA
CCCAACAACTGTGGTCGTTGAGGAGAAGATAAGTGCACTTGAGGGGGCTG
AATCAACTGTGATTATGGCATCTGGAATGTGTGCTAGCACAGTCATGTTG
TTGGCATTGGTTCCAGCCGGTGGGCATATTGTGACAACCACTGATTG
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