CV884267

Overview
NameCV884267
Unique NameCV884267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884267_ssr249 microsatellite CV884267_ssr249:249..260. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV884267 vs. ExPASy Swiss-Prot
Match: KEG_ARATH (E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.085e-75
Identity = 147/270 (54.44%), Postives = 176/270 (65.19%), Query Frame = 1 
Query:    1 KECLSRMFSASTDTTLSCPRCRHVSVVGNSVTALRKNFAVLALILXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGGRFGRGTHXXXXXXXXXXPVIEVGVHHDVKLVKKLGE----GRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 798
            K+CLS+MFS S+DTTL+CPRCRHVSVVGNSV  LRKN+A+LALI                                                    + G R  RG H          PVIEVG H ++KLV+++GE    G   GVE+W A + GG GRC+H VAVKK+ + E+M+ +W+ GQL++LRRASMWCRNVCTFHGV++MD  L L+MDRC+GSVQ  MQRNEGRLTLEQILRYGAD+ARGV ELHAAGV+CMNIKPSNLLLDA
Sbjct:   35 KDCLSKMFSTSSDTTLTCPRCRHVSVVGNSVQGLRKNYAMLALI-------------------------HAASGGANFDCDYTDDEDDDDEEDGSDEDGARAARGFHASSSINSLCGPVIEVGAHPEMKLVRQIGEESSSGGFGGVEMWDATVAGGGGRCKHRVAVKKMTLTEDMDVEWMQGQLESLRRASMWCRNVCTFHGVVKMDGSLCLLMDRCFGSVQSEMQRNEGRLTLEQILRYGADVARGVAELHAAGVICMNIKPSNLLLDA 279
The following BLAST results are available for this feature:
BLAST of CV884267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KEG_ARATH2.085e-7554.44E3 ubiquitin-protein ligase KEG OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884267 ID=CV884267; Name=CV884267; organism=Citrus sinensis; type=EST; length=798bp
AAAGAGTGTCTTTCTAGAATGTTCTCGGCTTCCACGGACACCACGCTCTC
TTGCCCCAGATGTCGCCACGTGTCCGTGGTGGGTAATTCCGTCACCGCCC
TCCGCAAGAACTTCGCTGTCCTCGCTTTAATCCTCTCGGCAAACAACACC
AACCAACATCACAACAGCAACAGCAACCATTTCGACAGCGACGTCACCGA
CGATGATGACGACGACGAAGACGACGAGGTCGACGAGTACGAGAATATTA
ATAATAATAACAACAGTAATATTTATGATGAGGACGGTGATGTTGGTGGC
AGATTTGGGCGTGGGACCCACGTGTCCAGTTCCGGTGTCGGTGTGTGTGG
CCCGGTGATTGAAGTTGGTGTCCACCACGATGTGAAATTAGTGAAGAAAT
TAGGGGAAGGGAGGAGGGCGGGGGTGGAAGTGTGGGGGGCGTGGATCGGG
GGAGGTCAAGGGAGGTGCAGGCACAGCGTGGCTGTTAAGAAAGTGATGAT
TGCTGAGGAAATGGAGCCTGATTGGTTGAGTGGTCAGCTTGATAATCTGA
GGCGGGCGTCTATGTGGTGTAGAAACGTGTGTACATTTCATGGAGTTTTG
CGGATGGATAGCTGTTTGGGGCTTGTTATGGATCGCTGTTATGGTTCTGT
TCAGTTGGCAATGCAGCGAAATGAGGGAAGATTGACTTTGGAGCAAATCT
TAAGATATGGGGCAGACATTGCACGAGGTGTTGTTGAACTACATGCTGCA
GGTGTTGTTTGTATGAACATAAAACCATCCAATCTTCTTTTAGATGCC
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