CV884255

Overview
NameCV884255
Unique NameCV884255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.128e-33
Identity = 88/215 (40.93%), Postives = 126/215 (58.60%), Query Frame = -2
Query:  308 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXE--KKLDADFKANA-----GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 919
            KTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  112 KTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 87/214 (40.65%), Postives = 125/214 (58.41%), Query Frame = -2
Query:  308 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXE--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 919
            KTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           KK D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  112 KTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 87/214 (40.65%), Postives = 125/214 (58.41%), Query Frame = -2
Query:  308 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXE--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 919
            KTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           KK D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  112 KTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.293e-31
Identity = 80/218 (36.70%), Postives = 116/218 (53.21%), Query Frame = -2
Query:  317 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXEKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSF 919
            KTF  AA+LA  + R  V +G   AL +MT+L  ++G  AP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  +   FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AV+ GK ++++I    V   GG+LFI FG+  F
Sbjct:   65 KTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.376e-30
Identity = 81/205 (39.51%), Postives = 116/205 (56.59%), Query Frame = -2
Query:  305 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 919
            KTFF A ILAMR+PRR VL G +G L  MTILS ++G +   L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A +ISEK V L GG+LF +F + S+ + +
Sbjct:   20 KTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 71/213 (33.33%), Postives = 110/213 (51.64%), Query Frame = -2
Query:  326 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXEKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 919
            KTF  AA++AMRH R LV S    +L +MTILS VVG  A   +S + T     +LF  FG     +      D G        E+++       D D     G T      + +    ++  + R      FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AVVGGK LA++IS + + L+  +LF +F +
Sbjct:   57 KTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269          
BLAST of CV884255 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.884e-17
Identity = 64/214 (29.91%), Postives = 99/214 (46.26%), Query Frame = -2
Query:  326 KTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXEKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 919
            K+F   A+LA ++ R  V  G   AL  MT  + +VG  AP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +    + FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AV+ G+ ++++I    V   GG++F++FGI
Sbjct:   42 KSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGI 255          
The following BLAST results are available for this feature:
BLAST of CV884255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN7.128e-3340.93Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT9.309e-3340.65Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE9.309e-3340.65Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO2.293e-3136.70UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY37.376e-3039.51UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST6.048e-2433.33UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO1.884e-1729.91UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884255 ID=CV884255; Name=CV884255; organism=Citrus sinensis; type=EST; length=920bp
TTTTTTTTTTAGCTTATGGCATGCCTCAAATATCTCATTTGAGATGGATT
AAACAATAACTTATTTCAATGGAGAACAACAATGAGTGCAGAGGCCAAAA
AATAATAATCAACTATTCAGTATGATATAACCCATTGAATATTTTTAGTG
ACTTAAACCAGTTTGCTTCTAGGCCATGCTTTCGTAATAATCATAATCAC
TGACTTGGCTAATGATAGAGCTTTGAAAGTATCAGTGAAAAATATTCTTC
AATTCACCAAATCAGCTTTCAATCCCACTAACATCATTGTGGGGATTATG
ACTTAACCGGCGAAAGGAAGGATTGAATTCCAAAAACAATGAAGAGAACT
CCACCCGAGAGTGCAACTATTTTCTCAGATATCTGAGACGCCAAGCTCTT
TCCTCCAACAACAGCAGCAGTCGTACACAATGCTTGTCCTATAATTCCAC
CAAGAACAACTCCAAATGGGTTCTCATCGGCAGCTAAACCAATGGTAGCT
AACTGGCTCTTGTCACCCCATTCACCAAAGAAAGTAATTGAAAATGCCTT
CAAAAAGATGGGAGAGAAGAACTGTAAGAGGAATGGCCGCCTTTGCTTTT
TTAATTCATCATCAGCCTTGCTGCCCTCTTTGGTTGCTCCTGCATTTGCT
TTAAAGTCAGCATCCAGCTTTTTTTCAACTTCTTCAAATTCTTCAGCCTC
CCCTCCATCACTAAAGGCATCCCATAAAGACCATAGACCAAATCCAAAGA
ACAGCACTGTTGTTATATGATGAGTCAATTTACGAGAGATCAGATTTGGA
GCGACCCAGCCAACAACAGCAGAAAGAATAGTCATCACAATCAAAGCTCC
CAGGCAACCTGACAAGACTAGTCTCCGCGGGTGACGCATTGCCAAGATCG
CAGCGGCAAAAAACGTCTTG
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