CV884254

Overview
NameCV884254
Unique NameCV884254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_PEA (Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.018e-75
Identity = 142/234 (60.68%), Postives = 164/234 (70.09%), Query Frame = -2
Query:  134 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ--------RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHF--QHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 805
            GEPGSEAHGGYTFCGLAAMILI E +RLDL  L+ WVVFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R HSII E      Q           EC +D T +                        +F  + R+ EPLFHSIALQ+Y+LLCSQ+  GGLRDK  K RD+YH+CYCLSGLS+CQ+SW K  DS PLP+ V+GPYSN+LEP+HP+FN+VLDRY EAHEFFS+
Sbjct:  186 GEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQMAEASQFVTVSDAPEEKEC-LDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHSIALQQYILLCSQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSWSKRPDSPPLPKVVMGPYSNLLEPIHPLFNVVLDRYREAHEFFSQ 418          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_ARATH (Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.202e-62
Identity = 122/233 (52.36%), Postives = 151/233 (64.81%), Query Frame = -2
Query:  131 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCH---FQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 805
            GEPGSEAHGGYT+CGLAAMILINE DRL+L +L+ W V RQGVE GFQGRTNKLVDGCY+FWQ     LL+R      H + G S           + D      +                     H   + +R  + +F S+ LQRY+LLCS+ P GG RDK RKPRD+YHTCYCLSGLS+ QH+WLKDED+ PL R ++G YSN+LEPV  + NIV+D+Y+EA EFF ++
Sbjct:  171 GEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYSNLLEPVQLLHNIVMDQYNEAIEFFFKA 403          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_HUMAN (Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.176e-39
Identity = 95/223 (42.60%), Postives = 116/223 (52.02%), Query Frame = -2
Query:  140 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 805
            G PG EAHGGYTFCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +                                      H+       +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   VLG   N L+P HPV+NI  D+  +A  +F
Sbjct:  241 GVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS-------------------------------------HW-------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_RAT (Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.536e-39
Identity = 95/223 (42.60%), Postives = 117/223 (52.47%), Query Frame = -2
Query:  140 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 805
            G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +                                      H+       +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   V+G   NVL+P HPV+NI  D+  +A   F
Sbjct:  241 GVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS-------------------------------------HW-------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 415          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_BOVIN (Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.421e-39
Identity = 94/223 (42.15%), Postives = 115/223 (51.57%), Query Frame = -2
Query:  140 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 805
            G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    + +                                             +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   VLG   N L+P HPV+NI  D+  +A   F
Sbjct:  241 GVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRW--------------------------------------------MFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATMHF 415          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_MOUSE (Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.835e-39
Identity = 94/223 (42.15%), Postives = 117/223 (52.47%), Query Frame = -2
Query:  140 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 805
            G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +                                      H+       +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   V+G   NVL+P HPV+NI  ++  +A   F
Sbjct:  241 GVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS-------------------------------------HW-------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDMVMGVPENVLQPTHPVYNIGPEKVIQATTHF 415          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_DICDI (Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.180e-25
Identity = 67/210 (31.90%), Postives = 102/210 (48.57%), Query Frame = -2
Query:  179 PGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLL-LCSQDPR--GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFN 799
            P +EAHGGYTFC +AA+ ++N   ++D+ +L  W+ +RQ  +GGF+GRTNKLVD CYS+WQG V+ +++ + +   +     D  G E                                    +E   LF+   LQ Y++  C Q  +   G  D   + +DYYHTCY LSG+S+ Q++ +     S      L  ++N  E   P  N
Sbjct:  241 PFNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKKQQQD-DGDGKE---------------------------------GDQQEEGLLFNQAKLQEYVIRFCQQSDKKYSGFSDHPHRGKDYYHTCYGLSGISLSQYNEIGKAIQS------LNTFTNTFEQPSPPIN 410          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_SCHPO (Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe GN=cpp1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 71/211 (33.65%), Postives = 91/211 (43.13%), Query Frame = -2
Query:  182 GEPGSEAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHS-IALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW-LKDEDSSPLPRAVLGPYSNVLEPVHPVF 805
            G P +EAHGGYTFC LAA+ L+   D L+   L  W+V RQ     GF GR+NKLVDGCYS+W G         H I+                                           +    H+    LF++   L  Y+L C Q   GGLRDK  K  D YHTCYCL GLS   + +     D      ++L    + L P HP++
Sbjct:  197 GVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGA-------SHVIVASG----------------------------------------YGSASHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDKPPKRPDQYHTCYCLLGLSSIAYDYRYHTSDGWSYKPSILHSSLSSLLPAHPIY 360          
BLAST of CV884254 vs. ExPASy Swiss-Prot
Match: FNTB_YEAST (Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae GN=RAM1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 68/224 (30.36%), Postives = 100/224 (44.64%), Query Frame = -2
Query:  140 EAHGGYTFCGLAAMILINEADRLDLAALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXEHCHFQHREREPLFHSIALQRYLLLCSQD-PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSP-----LPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 790
            EAHGGYTFC  A++ ++   D++++  L+ W   RQ   E GF GR+NKLVDGCYSFW GG  A+L  F                                                C  +H  R+          Y+L C Q+  + GLRDK     D+YHT YCL GL++ + S+    + SP      P  ++G  S+ L  V+PV+ + ++   +   +F
Sbjct:  256 EAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAF--------------------------------------------GYGQCFNKHALRD----------YILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAESSYSCTPNDSPHNIKCTPDRLIG--SSKLTDVNPVYGLPIENVRKIIHYF 423          
The following BLAST results are available for this feature:
BLAST of CV884254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FNTB_PEA1.018e-7560.68Protein farnesyltransferase subunit beta OS=Pisum ... [more]
FNTB_ARATH2.202e-6252.36Protein farnesyltransferase subunit beta OS=Arabid... [more]
FNTB_HUMAN1.176e-3942.60Protein farnesyltransferase subunit beta OS=Homo s... [more]
FNTB_RAT1.536e-3942.60Protein farnesyltransferase subunit beta OS=Rattus... [more]
FNTB_BOVIN3.421e-3942.15Protein farnesyltransferase subunit beta OS=Bos ta... [more]
FNTB_MOUSE5.835e-3942.15Protein farnesyltransferase subunit beta OS=Mus mu... [more]
FNTB_DICDI8.180e-2531.90Protein farnesyltransferase subunit beta OS=Dictyo... [more]
FNTB_SCHPO1.222e-2033.65Protein farnesyltransferase subunit beta OS=Schizo... [more]
FNTB_YEAST6.067e-2030.36Protein farnesyltransferase subunit beta OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884254 ID=CV884254; Name=CV884254; organism=Citrus sinensis; type=EST; length=845bp
ATCAATACACAAATATTTCTTTCACTGTCTGTAAGATCCAATTACAGCTT
AGAATATTAAAAATGTAGGCTATTTTGAGTTCGCATCACATCCCGCAAAA
TACATAATCCCTGAAGAAGATTTTTACTTAGGACCTTGAGAAAAATTCAT
GTGCTTCATGATACCGATCCAAGACAATATTGAAGACGGGATGAACCGGT
TCTAAGACATTGGAATACGGACCCAAGACAGCACGGGGCAATGGTGAAGA
ATCTTCATCCTTCAACCAGCTATGCTGACAAATGGAGAGGCCACTCAAAC
AATAACATGTGTGGTAATAGTCTCTAGGCTTCCGGAGTTTGTCTCTGAGT
CCACCTCTGGGGTCCTGTGAGCATAAAAGTAGGTATCTCTGCAAAGCAAT
GCTGTGAAAAAGAGGTTCCCTTTCTCTATGTTGAAAATGGCAGTGTTCAT
CACCCTGCGATGATATCTCATCCGAACTTCCGTCTCCTTCTGATACATCT
GATGCTGTAGTGGTTTGTGTATTATCTATACTGCATTCTGCTCCTCGTTG
ATCCACTGGTGTCGGACTCTCTCCAATGATTGAATGAAACCTCCGTAATA
ATGCAAATACGCCTCCCTGCCAGAATGAATAACAACCATCAACCAGTTTA
TTGGTTCTCCCCTGAAATCCACCTTCCACCCCTTGTCGAAACACCACCCA
CCCAATTAAGGCAGCCAAATCCAAACGATCAGCCTCATTGATCAGAATCA
TTGCAGCCAACCCACAAAAGGTGTACCCACCATGAGCTTCAGAACCAGGT
TCTCCTTGGGGCCAAAAGGGGAGAAGCTTCTTGTCTTTGATTTCA
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