CV884243

Overview
NameCV884243
Unique NameCV884243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig446 contig Csv1_Contig446:785..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884243 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = -3
Query:  339 GLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKIKFINVTVSLTKIG 704
            G+IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+RY ++V + +     ++  V VSL ++G
Sbjct:  268 GIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFERYAKLVGEYVYVSSPRYTIVIVSLLRMG 392          
BLAST of CV884243 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = -3
Query:  339 GLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKIKFINVTVSLTKIG 704
            G+IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE+++DELF+RY +IV +       ++  V +SL + G
Sbjct:  264 GIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFERYAKIVGEYFYVSSPRYAIVILSLVRAG 389          
BLAST of CV884243 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = -3
Query:  345 GLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQ---NGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKIKFINVTVSLTK 704
            GL++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG +I+D LF +Y + + + +S E   + ++ VSL++
Sbjct:  241 GLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSVENSSYFSIVVSLSR 363          
The following BLAST results are available for this feature:
BLAST of CV884243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_BRARP8.497e-1939.06Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
JMT_ARATH1.893e-1839.53Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA4.662e-1734.96Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884243 ID=CV884243; Name=CV884243; organism=Citrus sinensis; type=EST; length=706bp
CCAAAGGGCCACATACTAATTCTTTCATTCGAAGAGAATACAGTATTAAT
GCCGACACTTGTTGATACCAAAATTTACTGACATATTCAAACCAACGAGT
GATAGAATTAACTATGATAATTAAACATTCTAAATATTATCCTGAAATGT
GCACCTCAAATGAGTGATGTAACATTTATTAAGTGGACGGTGATGTTGAA
CATTTTTTAATACCCCATTTTCCCATCCACAATATTGAAGCACATCAATG
AGGACGCATCTTCTTGGGATAAATTATTGGAAAGGCTAACATGCCTCTCA
AGTTTTATTTCTTAATAATTGTCTTATCTTAGTGATCATCCAATTTTCGT
CAAGGAAACTGTCACGTTGATAAACTTAATCTTTTCCTTAGACATGCGAT
CGGCAACAATTTCCCTGTACCTTTTAAACAGCTCATCAATGATTGATTCA
CCAAACTGACTAACAAGCAAGGGCTCGGCCACAGCTCTCATGCAATTCGC
AACGTTGTATCCTCCATCATTAAATGCATCAACGGCCTCGTTAAACTTAA
AACCATTCTGATAAGCGTTCCAGTTAACTTCAGAAACCTCAAGGTGATCA
ATGGTGAAGGATCCTTCCTTTATAACCTCCGATTTTATTTCAGCTGGTGA
TGGTGTATACTGCGGAATGTTGAAACAATTCACTTTCTCTTCTTCTATGA
GTCCCT
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