CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9465 contig Csv1_Contig9465:419..886. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_ARATH (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 6.254e-45
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = -3
Query:   71 TSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 331
            +SIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR
Sbjct:  308 SSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_NEPOL (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.948e-38
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG++VP S TYT+VEAPKGEFGV+LVSNG+NRPYRCKIRAPGF HLQGLD MSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct:  314 IHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTIIGTQDIVFGEVDR 398          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_PROWI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii GN=NAD7 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.404e-38
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+ YT GF VPA  TYTAVEAPKGEFGV+LVSNG+++PYRCKIRAPGFAHLQGLDFM+++HMLADVVTIIGTQDIVFGEVDR
Sbjct:  316 IHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_NICSY (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.670e-38
Identity = 78/87 (89.66%), Postives = 79/87 (90.80%), Query Frame = -3
Query:   71 TSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 331
            +SIHHFE YTEGFSVPA STYTAVEAPKGEFGVFLVSNGSNRPYR KIRAP FAH QGLD MSKHHM ADVVTIIGTQDIV GEVDR
Sbjct:  308 SSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.649e-37
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+SVP   TYTAVEAPKGEFGV+LVS+GS++PYRCKI+APGF+HLQGL+FMSK HM+ADVVTIIGTQDIVFGEVDR
Sbjct:  312 IHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pan troglodytes GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGEVDR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGEVDR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGEVDR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Bos taurus GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGEVDR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Rattus norvegicus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.063e-36
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGE+DR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NDUS2_ARATH6.254e-4598.85NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]
NDUS2_NEPOL1.948e-3885.88NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_PROWI7.404e-3884.71NADH-ubiquinone oxidoreductase 49 kDa subunit OS=P... [more]
NDUS2_NICSY9.670e-3889.66NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_RECAM1.649e-3783.53NADH-ubiquinone oxidoreductase 49 kDa subunit OS=R... [more]
NDUS2_PANTR3.111e-3682.35NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_HUMAN3.111e-3682.35NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_GORGO3.111e-3682.35NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_BOVIN3.111e-3682.35NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_RAT4.063e-3681.18NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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