CV884217

Overview
NameCV884217
Unique NameCV884217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 1.156e-91
Identity = 154/250 (61.60%), Postives = 193/250 (77.20%), Query Frame = -3
Query:  169 SLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKGKKSCSPDFKASIAGHCDLLIKEFTYIGVKD 918
            S +Q S   VK++Q +WKILENDLP+ I VR  ESRMDLLRAVI+GAEGTPYHDGLFFFD+ FP  YP+VPPNVHYHSGGLR+NPNLYNCGKVCLSLL TW G   EKW+P+ STMLQ+LVSIQALILNE+PYFNEPG+        GE +S +Y+E  F+LSLKTM+Y++RRPP+HF ++V  H++ R+HDI+ AC AY  GA +GS+VKG VQ + + ++S S  FK  +A     ++ EF  +GVK+
Sbjct:  264 SSKQHSKNWVKKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAYKAGAPLGSMVKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLGVKE 513          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 5.370e-89
Identity = 157/251 (62.55%), Postives = 185/251 (73.71%), Query Frame = -3
Query:  163 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKGKKSCSPDFKASIAGHCD-LLIKEFTYIGVKDCE 912
            +Q S    KRIQ+EW+ILE DLP+ IFVR YESRMDLLRAVI+GA+GTPYHDGLFFFD+FFP  YP+ PP VHYHSGGLR+NPNLYNCGKVCLSLL TW G++ EKWIP+ STMLQVLVSIQ LILN++PYFNEPG+E       GE  S  Y+E  FILSLKTM+YT+RRPPK+F DF  GHF+  AHD+L AC AY +GA  G LVKG            S  F+  +A   + +L+KEF  +GV   E
Sbjct:  327 KQHSKDWAKRIQDEWRILEKDLPEMIFVRAYESRMDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLSLLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNGATPGYLVKGAPDVEENSAGMSSLKFRTDVATFVETVLLKEFILLGVLGLE 577          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.050e-72
Identity = 135/245 (55.10%), Postives = 165/245 (67.35%), Query Frame = -3
Query:  157 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVK-GRVQKIHKGKKSCSPDFKASIAGHCDLLIKEFTYIGVKDCENF 888
            K++ ++WKIL+N+LPD IFVR YE RMDLLRAVIVGA GTPY DGLFFFD   PSDYP+VPP+ +YHSGG RLNPNLY  GKVCLSLLNTW G  NE W P  S++LQVLVS+Q L+LN +PYFNE G++      EGE+ S  YNE  F+L+ KTM+Y +R+PPK F + +  HF +R + IL AC AYM G  +GSL K   V        S S  FK  +A     L    + +G  DC  F
Sbjct:  853 KKVDQDWKILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDAYMKGYLIGSLTKDASVIDERSSANSTSVGFKLMLAKIAPKLFSALSEVGA-DCNEF 1096          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 5.049e-71
Identity = 131/248 (52.82%), Postives = 168/248 (67.74%), Query Frame = -3
Query:  166 QPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKGKKSCSPDFKASIAGHCDLLIKEFTYIGVKDC 909
            Q +   VK++Q+EW  LE +LP+TI+VRV E RMDLLRA +VGA GTPYHDGLFFFD+  P  YP+ PP VHYHSGG+RLNPNLY  G+VCLSLLNTW G   E W    S++LQ+L+S QAL+LNE+PYFNE G++      EGE+ S  YNE AF+++ K+M+  +R+PPKHF   V  HF  RA  +LAACKAYM+G  VGS        +     + S  FK  ++     L++ F+ IGV DC
Sbjct:  658 QVTKSWVKKVQQEWSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEGVPVGSSA-----NLQGNSTTNSTGFKIMLSKLYPKLLEAFSEIGV-DC 899          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40
Identity = 86/199 (43.22%), Postives = 120/199 (60.30%), Query Frame = -3
Query:  316 KRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYM 888
            +R+ +E   L   LP     ++FVR  E R+D+++ +I G   TPY +G F FDV+FP DYP+ PP V+  + G   +R NPNLYN GKVCLS+LNTW G   EKW P  S+ LQVLVS+Q+LIL   PYFNEPG+E       G + S  Y+      ++K  ML  +R P   F + +  HFY +  +I+A C+ ++
Sbjct: 4548 RRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 4746          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2O_MOUSE (Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.609e-40
Identity = 86/182 (47.25%), Postives = 114/182 (62.64%), Query Frame = -3
Query:  361 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHF 903
            + K    +++E  +L   LPD I V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF
Sbjct:  948 AKKFFSTVRKEMALLATSLPDGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1128          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2O_HUMAN (Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 1.027e-39
Identity = 105/282 (37.23%), Postives = 154/282 (54.61%), Query Frame = -3
Query:   67 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKG--KKSCSPDFKASIAGHCDLLIKEFTYIGVKDCENFLTQAKAEVPGVGNEPESGNEPESGNRGFHS 903
            + K    +++E  +L   LP+ I V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF      ++   ++++   E  +L++ + Q +  G  K S SP+  A         + E +  G ++ E+         PG   E   G++ E G +G  S
Sbjct:  951 AKKFFSTVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESWL---ETHALLE-KAQALPNGVPKASSSPEPPA---------VAELSDSGQQEPED-----GGPAPG---EASQGSDSEGGAQGLAS 1210          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC3_MIMIV (Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.128e-33
Identity = 79/217 (36.41%), Postives = 116/217 (53.46%), Query Frame = -3
Query:  265 VKRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHS---GGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIH 891
            +K I  E      +LP     +I+ R     +     +I G E +PY  G F F ++ PS YPN  P V   +   G +R NPNLY  GKVCLS+L TW G   E WIP +S+MLQV++SIQ+L+L   PYFNEPG+ES    ++G + S  YN++     +K  M+  ++ P   F   +  HF  +A  I   C+ +++ A   +  K   QK++
Sbjct: 1215 LKAISRELLSHSKNLPVEYGSSIYYRYSPENIRYHEFIITGPEDSPYDSGCFHFRMYNPSAYPNTSPFVSMTTTGHGSVRFNPNLYADGKVCLSILGTWRGQAGESWIPGVSSMLQVMISIQSLVLISEPYFNEPGYESSRGTDKGNKLSTEYNQKVRFNCMKWAMIDVIKNPVPGFESMIKKHFSIKAPHIKQVCQTWINEAPDNN--KSEYQKLY 1429          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = -3
Query:  538 KRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHY---HSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 888
            KRI +E   + N LP    ++I+V   E R+D+++ +I G + TPY +GLF FD+FFP+ YP  PP   +    SG +R NPNLYN GK+CLS+L TW+G   EKW P  S ++QVLVSIQ +I
Sbjct:  412 KRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCS-LMQVLVSIQEVI 534          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.298e-20
Identity = 64/158 (40.51%), Postives = 82/158 (51.90%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ SN+ V RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   53 ERASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-LSSVLISIQSL-MTENPYHNEPGFE----QERHSGDSKNYNE 201          
The following BLAST results are available for this feature:
BLAST of CV884217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UBC26_ARATH1.156e-9161.60Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC25_ARATH5.370e-8962.55Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC23_ARATH2.050e-7255.10Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
UBC24_ARATH5.049e-7152.82Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
BIRC6_HUMAN2.069e-4043.22Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBE2O_MOUSE4.609e-4047.25Ubiquitin-conjugating enzyme E2 O OS=Mus musculus ... [more]
UBE2O_HUMAN1.027e-3937.23Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens ... [more]
UBC3_MIMIV7.128e-3336.41Probable ubiquitin-conjugating enzyme E2 R521 OS=A... [more]
UBC17_CAEEL1.219e-2448.39Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBE2Z_XENTR5.298e-2040.51Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884217 ID=CV884217; Name=CV884217; organism=Citrus sinensis; type=EST; length=920bp
GGATATAAAAACTTATGAATGTCTTAATTATATAACACTAAGTGTCAAAT
TTCTAAGTTAGAATTAAGAATGAAATCCTCTGTTCCCAGACTCAGGCTCA
TTCCCAGACTCAGGCTCATTACCAACTCCAGGCACCTCTGCTTTTGCTTG
AGTTAGGAAATTCTCGCAGTCCTTAACTCCGATATATGTAAATTCTTTTA
TGAGAAGATCACAATGCCCAGCTATGGAGGCCTTAAAATCCGGTGAGCAG
CTCTTTTTGCCCTTGTGAATTTTCTGCACACGACCTTTGACCAGAGAACC
CACTTCAGCACCATCCATGTATGCTTTACATGCAGCCAGAATATCATGTG
CACGCTGGTAAAAGTGGCCACTAACAAAATCATTGAAATGCTTTGGAGGT
CTCCTGACAGTGTACAGCATTGTCTTCAGTGACAAGATAAATGCACGCTC
ATTGTACATATTGGACTGTCTTTCACCTTCTTCCATGCTGTCCATACTTT
CCCAACCAGGTTCGTTAAAGTAAGGCCTTTCATTCAAGATCAGTGCTTGT
ATAGAGACCAAAACTTGTAGCATGGTTGACATAGAAGGGATCCACTTCTC
ATTCTTATCACCATCCCAGGTGTTAAGAAGACTAAGGCATACCTTCCCAC
AATTATATAAATTTGGATTGAGTCGAAGGCCACCGGAGTGGTAGTGGACA
TTCGGAGGTACATTAGGATAATCACTAGGGAAGAAAACATCAAAGAAGAA
CAGGCCATCATGGTAGGGAGTTCCCTCTGCCCCTACAATTACGGCCCTCA
AAAGATCCATCCTTGATTCATAAACCCTCACAAAAATTGTATCTGGCAAA
TCATTTTCCAGGATTTTCCACTCTTCCTGAATTCGCTTCACCAATTTATT
TGATGGCTGCTCCAATGATG
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