EY665247

Overview
NameEY665247
Unique NameEY665247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.272e-13
Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  143 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTD 340
            + L  +  ++ A+V   +   DAE+ DA P+L+IV++++VG D +D+ +  + GV +TNTPDVLT+
Sbjct:   37 EVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTN 102          

HSP 2 Score: 39.2762 bits (90), Expect = 3.272e-13
Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 3
Query:  348 ADLAIGLMLAVLRRLCESNKYVKKWKLEERGLKAEHLIST-----GKKVGIMGLGKMG 506
            AD+A  L+LA  RRL E++K+V+  + ++RG+    L+       G+ +GI+G G++G
Sbjct:  105 ADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIG 162          
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.171e-13
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 2
Query:  170 IRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTD 340
            + A+V   T   D EL++  PKL+I++ ++VG D +D+ +  ++G+ VTNTP VLTD
Sbjct:   46 VDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTD 102          

HSP 2 Score: 40.4318 bits (93), Expect = 7.171e-13
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3
Query:  348 ADLAIGLMLAVLRRLCESNKYVK--KWKLEERGLKAEHLIS---TGKKVGIMGLGKMGWEL 515
            ADLA  L+LAV RR+ E++ +V+  +WK  E G      +     GK +GI+G G++G  L
Sbjct:  105 ADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQAL 165          
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.467e-12
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  143 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDERGRF 355
            + L  +  ++ A+V   +   D+E+ DA P+L IV++++VG D +DV +   +G+ VTNTPDVLTD    F
Sbjct:   37 EVLLKKVRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADF 107          

HSP 2 Score: 33.113 bits (74), Expect = 4.467e-12
Identity = 21/59 (35.59%), Postives = 33/59 (55.93%), Query Frame = 3
Query:  348 ADLAIGLMLAVLRRLCESNKYVKKWKLEERGLKAEH------LISTGKKVGIMGLGKMG 506
            AD A  L+LA  RRL E++ + +  + + RG+ A H          GK +GI+G G++G
Sbjct:  105 ADFAWTLLLATARRLIEADHFTRSGEWKRRGI-AWHPRWFLGYDVYGKTIGIVGFGRIG 162          
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.797e-12
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  206 DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDERGRF 355
            DAE++DA P L+++S++SVG D +D+ +  ++G+ VT+TP VLTD    F
Sbjct:   60 DAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEF 109          

HSP 2 Score: 36.1946 bits (82), Expect = 5.797e-12
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = 3
Query:  345 VADLAIGLMLAVLRRLCESNKYVK--KWKLEERGLKAEHLISTGKKVGIMGLGKMG 506
            VA+  +GL+LAV RR+ E++K ++  +W               GK +G++GLG++G
Sbjct:  106 VAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIG 161          
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.269e-11
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  143 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTD 340
            + L  +   + A+V   +   D E+ +  PKL IV++++VG D +D+ +  ++G+ VTNTPDVLTD
Sbjct:   37 EILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTD 102          

HSP 2 Score: 35.8094 bits (81), Expect = 1.269e-11
Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  348 ADLAIGLMLAVLRRLCESNKYVKKWKLEERGLKAEH------LISTGKKVGIMGLGKMG 506
            ADLA  L+LA  R + + +++V+  + ++RG+ A H          GK +GI+GLG++G
Sbjct:  105 ADLAFALLLATARHVVKGDRFVRSGEWKKRGV-AWHPKWFLGYDVYGKTIGIIGLGRIG 162          
BLAST of EY665247 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.648e-11
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  143 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDERGRF 355
            + L  +  ++ A+V   +   D E+ D  P+L IV++++VG D VDV +   +G+ VTNTPDVLT+    F
Sbjct:   37 EVLLEKVRDVDALVTMLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADF 107          

HSP 2 Score: 35.4242 bits (80), Expect = 1.648e-11
Identity = 19/58 (32.76%), Postives = 33/58 (56.90%), Query Frame = 3
Query:  348 ADLAIGLMLAVLRRLCESNKYVKKWKLEERGLKAEHLISTG-----KKVGIMGLGKMG 506
            AD A  L+LA  RRL E++ + +  + + +G+    L+  G     K +GI+G G++G
Sbjct:  105 ADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIG 162          
The following BLAST results are available for this feature:
BLAST of EY665247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GYAR_THEON3.272e-1339.39Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_THELI7.171e-1342.11Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_PYRKO4.467e-1239.44Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_THEPD5.797e-1246.00Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_PYRHO1.269e-1137.88Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_THEGJ1.648e-1138.03Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665247 ID=EY665247; Name=EY665247; organism=Citrus sinensis; type=EST; length=1028bp
ACCCGGGATCCGGGATTTCCCGGGTCGACCCCACGTCCGGTCAATCGGTG
TCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCGAGAGA
AGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAGTTCCT
AAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGACGGCCG
GTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTGTATCG
AGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAAGAAAA
GGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGAACGTGGCC
GATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTGAGAG
CAATAAGTATGTCAAAAAGTGGAAATTGGAAGAAAGGGGATTAAAAGCTG
AACACCTAATTTCCACTGGGAAAAAAGTTGGCATAATGGGGCTAGGAAAA
ATGGGATGGGAATTGCTATAATACTAAAACATTTTACTGCCCATACACCT
TCAACTTCAGAACAAAAAAACCAATTTGAATAACAATTATTACCTCTATG
GTACTTAAATTGGGTCTAACATGGCACATTCAGCCGTAGGATGCCCCAAA
CGGTATAAAAACCTCAATTCCATAAACATGGTTTAGTTGAAGTTTTGAGA
ACAAGAGGGATTTAACCGAATAGGGGGGGGTTCCCACATGGCGAAAAAGA
GAACTATAGATAACAGGAGTAATGGACAATATACGTGAATTAGTCCAGTT
TATTTTAAGAAAATCTTACTGATCGCTGTAGGTCTATGTCATCAGAAAAA
TACACCTCTAAATCGACAAAAAAGAATGACAACTACAAAAAAACCAAATA
ACAATGAAAAGATGATCACATAAAACTTATAGTTATTTATTACCCAACTT
CGGAAATAAGACAATTAATGTAAAGTACACGTACATAATTATATAAACGA
CTGAAAATGTTACACGAACACATATAAA
back to top