EH406498

Overview
NameEH406498
Unique NameEH406498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EH406498 vs. ExPASy Swiss-Prot
Match: XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.247e-50
Identity = 105/168 (62.50%), Postives = 128/168 (76.19%), Query Frame = 1 
Query:    1 GCKRLSWTFEKEGTKLEWRWKFGPAPNSKKVTAGILDFLMDANIRLSDEVVTKTQSFERLKVETQKCLAQSERFKNEKVEFESAIYSKFLGVLNSKKSKLRELRDKLSKQAVMGDLQQEEEESTDKTESFDGG-SDDDKSEEQPTKDITSTSIGVPASRARGRKRISR 501
            G KRLSWTFEKEGTKLEWRWK  P+ +SKK+T GILDFLM+ANIRLS+EVV KT+SFE+++ E ++CLAQ E+  +EK EFESA Y+KFL VLN+KK+KLR LRDK     V+     EEEESTDK ESF+ G SDD+KSEE+ +K  TS       S+ARG KR +R
Sbjct:  108 GSKRLSWTFEKEGTKLEWRWKCKPSDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVLNAKKAKLRALRDKEDSVRVV-----EEEESTDKAESFESGRSDDEKSEEEASKKATS-------SKARGGKRAAR 263
The following BLAST results are available for this feature:
BLAST of EH406498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XRCC4_ARATH2.247e-5062.50DNA repair protein XRCC4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DA07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406498 ID=EH406498; Name=EH406498; organism=Citrus sinensis; type=EST; length=674bp
GGATGTAAAAGATTGTCATGGACATTTGAGAAGGAGGGGACTAAGCTTGA
ATGGCGGTGGAAATTCGGACCGGCACCTAATAGCAAGAAGGTTACTGCAG
GAATTTTGGACTTTCTTATGGATGCAAACATTAGACTCAGTGATGAAGTT
GTCACAAAAACTCAATCATTTGAGAGACTGAAAGTGGAGACTCAGAAATG
TTTAGCACAAAGTGAGAGATTTAAAAATGAGAAGGTGGAATTTGAATCAG
CAATCTACTCAAAGTTCCTTGGTGTGTTGAATTCAAAGAAATCAAAACTC
AGAGAGCTTCGAGACAAGCTTTCAAAACAGGCAGTCATGGGGGATTTGCA
ACAAGAAGAGGAAGAGTCTACAGACAAAACTGAGAGTTTTGATGGAGGCA
GTGATGATGACAAGAGTGAGGAACAACCCACAAAGGATATTACAAGCACT
TCAATAGGTGTTCCAGCTAGTAGGGCTCGTGGTAGAAAGAGGATTTCTCG
CAAATAGCATCTAAGTAATTAAATTTAGATTTGAGCAGTGAATGCTAACC
TCTCCTTTTTCTTACTTATAATGTAAATCATGTAATGAATGTGCTGAGTT
TTGTAGAGGGATACAGATTTTTCTTCATTCCCAATAAGTAAATGCAGCAA
AAGGACTTTAAGTCCCTTAGCTTT
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