EH406494

Overview
NameEH406494
Unique NameEH406494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.734e-23
Identity = 49/57 (85.96%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 171
            DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.579e-22
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 159
            DGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   50 DGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 171
            DGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   50 DGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 159
            DGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   50 DGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.168e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 171
            DGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   50 DGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 162
            DGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   76 DGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.137e-17
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 174
            DG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   66 DGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 153
            DGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   48 DGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 150
            +GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:  123 EGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of EH406494 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 147
            G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:  109 GPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
The following BLAST results are available for this feature:
BLAST of EH406494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GLRX_SOLLC1.734e-2385.96Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO5.579e-2284.91Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ2.769e-2180.70Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_RICCO2.769e-2186.79Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH6.168e-2181.03Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC4_ORYSJ1.680e-1875.93Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH4.137e-1767.24Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI3.068e-1262.75Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH5.787e-1160.00Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GRS10_ORYSJ9.871e-1160.42Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CF12FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406494 ID=EH406494; Name=EH406494; organism=Citrus sinensis; type=EST; length=406bp
GATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAAC
TGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGCGATTCAA
CTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCT
GGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCTGCCTGTT
TATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCTGTCTGAA
TTAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGT
TCAGTTTCTGTTTTATGTTGAAATCTGTATGAATTTTATCAGATTTTCCA
TCTACTATATCCATGTAGAGTCATTTCTGCTGTAAATTATTTCAGTGTCC
TTGCTA
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