EH406486

Overview
NameEH406486
Unique NameEH406486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406486 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 2
Query:    2 LPPTVGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQD 112
            LPPT GWGLGIDRL MLLTDSQNIKEVLLFPAMKPQD
Sbjct:  566 LPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 602          
BLAST of EH406486 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    2 LPPTVGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDE 115
            LPPT GWG+GIDR+AM LTDS NIKEVLLFPAMKP+D+
Sbjct:  541 LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDK 578          
BLAST of EH406486 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    2 LPPTVGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDE 115
            LPPT GWG+GIDRL M LTDS NIKEVLLFPAMKP+D+
Sbjct:  539 LPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDK 576          
BLAST of EH406486 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    2 LPPTVGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDE 115
            LPPT GWG+GIDR+ M LTDS NIKEVLLFPAMKP+D+
Sbjct:  541 LPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDK 578          
BLAST of EH406486 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 2
Query:    2 LPPTVGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQD 112
            LPPT GWG+GIDRL+M+LTD+ NIKEVLLFPAM+P+D
Sbjct:  521 LPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAMRPED 557          
The following BLAST results are available for this feature:
BLAST of EH406486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SYK_ORYSJ1.861e-1394.59Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_HUMAN2.057e-1281.58Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYK_MOUSE2.687e-1281.58Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_CRIGR5.985e-1278.95Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYK_CAEEL1.741e-1178.38Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CE07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406486 ID=EH406486; Name=EH406486; organism=Citrus sinensis; type=EST; length=443bp
GTTGCCTCCGACTGTTGGCTGGGGTCTAGGCATCGATCGGCTGGCTATGT
TGCTTACTGACTCACAAAATATCAAGGAGGTTCTTCTCTTCCCAGCCATG
AAGCCTCAAGATGAACCTGCTGCTGCTAAAGCAACTCAGTGAGTTTGAAC
TGTTGAATTCGAGAAAGTTTAATTTGTTTCTTGTATGCGCTATCGGCATT
CCAAGAGGAAGTCCTGCCAGTCAACTTTTTGTTATTAATTTTGCTCCGGT
TAGTTATTGTTTAGGGTTTTATTATAGAACCCTTTCAGTGTGGGGTATTT
TGTGAAGTGCCATATCATGGTATTTATTAAGTATAGTGGACATATATATT
ATTTTAAATTTTACCAATTTGAATCAGCTTGTTGACCGAATTTCTTCAGA
TAATTGTGATTATTTCAGCTTCTGAAAGCAGAGTTTCAATCTC
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