FC871859

Overview
NameFC871859
Unique NameFC871859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6451 contig Csv1_Contig6451:112..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.673e-62
Identity = 117/122 (95.90%), Postives = 121/122 (99.18%), Query Frame = 2
Query:    2 YKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            YKILLKEPNTKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK+VEDVDKDRRYAIDAA+VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
Sbjct:  617 YKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L+K P  K +   D F FN +F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK LGH  LVSE   QL    KP    +KKR+E LI RDY+ERDK+NPN + Y+A
Sbjct:  637 RVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L+K P  K +   D F FN+ F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK LGH  LVSE   QL    KP    +KKR+E LI RDY+ERDK++PN + Y+A
Sbjct:  637 RVLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 YKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIP------LPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            YKILLK+P  + ++  D F FN  F   + RIKI       +    ERK+ +E VD+ R++  DA +VR+MK RKV  H QL++E   QL+  F P    IK+R+E LI R+YL+R  +N  ++ YLA
Sbjct:  658 YKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L K P  K I   D F  N  F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK L H  LVSE   QL    KP    +KKR+E LI RDY+ERDKENPN + Y+A
Sbjct:  773 RVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 52/118 (44.07%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   29 TKTISQSDHFEFNSKFTDRMRRIKIPL-----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            +K+I +SD F FN+KF  ++ R+K+        PV+E K+  + VD+DR++ I+A++VRIMK+RK L H  LVSE ++QL   F P+   +KKR+E LI R+YLER K++  ++ Y+A
Sbjct:  653 SKSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEE-KETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L KEP +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMKSRK + H  LV+E  +QL   F P    IKKR+E LI R+YL R  E+  ++ Y+A
Sbjct:  642 RVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L KEP +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMKSRK + H  LV+E  +QL   F P    IKKR+E LI R+YL R  E+  ++ Y+A
Sbjct:  642 RVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L KEP +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMKSRK + H  LV+E  +QL   F P    IKKR+E LI R+YL R  E+  ++ Y+A
Sbjct:  642 RVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of FC871859 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    5 KILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 367
            ++L KEP +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMKSRK + H  LV+E  +QL   F P    IKKR+E LI R+YL R  E+  ++ Y+A
Sbjct:  642 RVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
The following BLAST results are available for this feature:
BLAST of FC871859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CUL1_ARATH3.673e-6295.90Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4A_HUMAN1.971e-2348.00Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE9.780e-2347.20Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL3_SCHPO3.716e-2242.19Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4B_HUMAN6.339e-2248.00Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL3_DICDI5.366e-2144.07Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_XENTR5.933e-2041.73Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA5.933e-2041.73Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA5.933e-2041.73Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE7.749e-2041.73Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CB07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871859 ID=FC871859; Name=FC871859; organism=Citrus sinensis; type=EST; length=708bp
GTATAAGATCCTTCTCAAGGAGCCAAATACGAAAACCATCTCACAAAGTG
ACCACTTTGAGTTCAACTCTAAGTTTACAGACAGAATGAGGAGGATAAAG
ATTCCTCTCCCACCGGTTGATGAAAGGAAGAAAATTGTTGAAGATGTAGA
CAAAGACAGACGATATGCTATTGATGCTGCATTAGTGCGCATAATGAAGT
CTCGGAAAGTTTTGGGTCATCAGCAGTTGGTGTCCGAGTGTGTTGAGCAG
TTGAGTCGCATGTTCAAGCCTGATATTAAAGCAATCAAGAAGAGGATGGA
AGATCTTATCACAAGAGATTATCTGGAGAGGGACAAGGAAAACCCTAACA
TGTTTAGGTACTTGGCCTAATTTGATGATGAAAAGGCAGGCGGAGTGAGA
GCCGAGATGCATGCGCTGAAAAAGGCATAGAGAGAGCTGGGAAGTAAAAT
TTTTGATTTGATGATGGTGGTGGCTGCATGGAAATTGAAGTTGAAAACAT
AAAAGATGCTGTAAATGCTGTCTGTGTAGTTGTGGTGGTGGCTTCTTTTG
ACACTAGGAAAGATGGTACCTACCAGTGACTGGAGAATTTTTGTGGACTT
TCCCTCAGTTTTGTGTAATACATCATACCATTCGTTCTTGGAGCTGGAGG
AACCCCAAAAAAGGGGAAAAAGGAAAAGAAAATTAACAGGAGAAGCGTTA
TTGATTTT
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