FC871857

Overview
NameFC871857
Unique NameFC871857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13524 contig Csv1_Contig13524:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871857 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 3
Query:    6 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            C DP+I+TVCLEGLENILKVG AE N G   GD N YAQL+++AEGLEKIENL+S D N I EKAVKILETYW
Sbjct:  423 CPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494          
BLAST of FC871857 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.090e-22
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    6 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            C DP+IVTVCLEGLENILKVG AE N G   GD N YAQ++++AEGLEKIENL+S D   I EKAVK+LE+YW
Sbjct:  429 CPDPRIVTVCLEGLENILKVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499          
BLAST of FC871857 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.519e-21
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    6 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            C DP+IVTVCLEGLENILK+G A+ + G   G  N YAQL++EAEGLEKIENL+S D   I EKAVKILETYW
Sbjct:  424 CPDPRIVTVCLEGLENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495          
BLAST of FC871857 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    6 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYWS 227
            C D K+VTVCLE LENIL VG AE N G   G+ N YAQ+++EAEGLEKIENL+S D N I +KAVKILET+W+
Sbjct:  426 CPDLKVVTVCLEALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWT 498          
BLAST of FC871857 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.478e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    6 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            C D +IVTVCLEGLENILKVG  E +   A GD N ++Q+++EAEGLEKIENL+S D N I EKAVKILE YW
Sbjct:  423 CPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493          
The following BLAST results are available for this feature:
BLAST of FC871857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IMA1_ARATH2.204e-2373.97Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ7.090e-2269.86Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA_SOLLC3.519e-2169.86Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA2_ARATH1.132e-1966.22Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ1.478e-1967.12Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CB04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871857 ID=FC871857; Name=FC871857; organism=Citrus sinensis; type=EST; length=506bp
TTCAATGTGCTGATCCAAAGATCGTCACTGTTTGCTTAGAAGGATTAGAG
AACATTTTGAAGGTCGGGGTAGCTGAAATGAATACGGGTACCGCCGTTGG
AGATTTTAATCAATATGCCCAGTTGGTTGAGGAGGCTGAGGGATTAGAAA
AGATTGAAAATCTACGAAGTCGTGACGTCAACGGGATCTCTGAGAAGGCA
GTAAAGATTCTCGAGACATACTGGTCTAGCCGTGTGATTGGAAGAGGACG
ATGATACAAAGGAGGAAGATGCAAAAGGCAGAGACAACTAGTAGTAATTA
TTAACAAAGGTTTAATGGTGGAAGATTCATGCATGCTTGTGTGCCCCTCT
CCTGTTAAGTGTATTGTGGATTGCTGCTGTGTTTCGACACAGTTAATGAT
GAAACTCCTCATCAAATGATCTTTAATCATTCTAATCATGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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