CX301074

Overview
NameCX301074
Unique NameCX301074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_SHISS (Cellulose synthesis regulatory protein OS=Shigella sonnei (strain Ss046) GN=SSON_2013 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  477 VAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 563
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_SHIDS (Cellulose synthesis regulatory protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=SDY_1050 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  472 VAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 558
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_ECOUT (Cellulose synthesis regulatory protein OS=Escherichia coli (strain UTI89 / UPEC) GN=UTI89_C2157 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  477 VAGRVGGEEFCVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 563
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_ECOLI (Cellulose synthesis regulatory protein OS=Escherichia coli (strain K12) GN=yedQ PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  472 VAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 558
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_ECO57 (Cellulose synthesis regulatory protein OS=Escherichia coli O157:H7 GN=yedQ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  472 VAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 558
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_SHIFL (Putative cellulose synthesis regulatory protein OS=Shigella flexneri GN=yedQ PE=5 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            VAGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  477 VAGRVGGEEFCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 563
[Close]
BLAST of CX301074 vs. ExPASy Swiss-Prot
Match: YEDQ_ECOL6 (Cellulose synthesis regulatory protein OS=Escherichia coli O6 GN=yedQ PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.528e-11
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   24 VAGRYGGEELCILLPNTPLEGARKFAETLRSRI-EAQVHSAGARTVPVTASLGVGSFNHMDIDDAEMLLKQADAALYRAKANGRNRV 281
            +AGR GGEE C++LP   L  A + AE +R ++ E ++  A + T+ ++ASLGV S       D E L   AD  LY AK  GRNRV
Sbjct:  477 IAGRVGGEEFCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 563
The following BLAST results are available for this feature:
BLAST of CX301074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YEDQ_SHISS4.413e-1144.83Cellulose synthesis regulatory protein OS=Shigella... [more]
YEDQ_SHIDS4.413e-1144.83Cellulose synthesis regulatory protein OS=Shigella... [more]
YEDQ_ECOUT4.413e-1144.83Cellulose synthesis regulatory protein OS=Escheric... [more]
YEDQ_ECOLI4.413e-1144.83Cellulose synthesis regulatory protein OS=Escheric... [more]
YEDQ_ECO574.413e-1144.83Cellulose synthesis regulatory protein OS=Escheric... [more]
YEDQ_SHIFL5.764e-1144.83Putative cellulose synthesis regulatory protein OS... [more]
YEDQ_ECOL67.528e-1143.68Cellulose synthesis regulatory protein OS=Escheric... [more]
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Properties
Property NameValue
Genbank descriptionC08005E01SK PhyRootSw1 Citrus sinensis cDNA clone C08005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301074 ID=CX301074; Name=CX301074; organism=Citrus sinensis; type=EST; length=410bp
CTCGTGCCGAATTCGGCACGAGGGTCGCCGGACGCTACGGCGGCGAAGAA
TTGTGTATCCTGTTGCCGAACACGCCGCTCGAAGGGGCGCGCAAGTTCGC
AGAAACGTTGCGGTCGCGGATCGAAGCCCAGGTGCACAGCGCCGGGGCGC
GCACGGTGCCGGTGACAGCCAGCCTCGGCGTCGGCTCCTTCAACCATATG
GATATCGACGACGCCGAGATGCTGCTGAAGCAAGCCGATGCAGCGCTGTA
CCGGGCCAAGGCCAATGGCCGCAACCGTGTGGAAGGCTGAACAGGACAGG
AGTTTGCATGCCGAAGGCAATATGGAATGGCGCCGTCATCGCAGAGGCGG
ACAGCAGCGAAGTCGATCACGCGCACGTTGTCGCGCAGCAGCCGGCCGAT
CGCCGCCAGT
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