CX043488

Overview
NameCX043488
Unique NameCX043488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.287e-49
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN+IV GI SDVSKVV+ADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQ+ALAPLV VAL L KM++FTGRSAPTVIT
Sbjct:  474 VNEIVSGIQSDVSKVVHADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLXKMQEFTGRSAPTVIT 582          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.482e-48
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN IVKGI SDV+ V +ADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD SKTGR+SQEAL+PLV++ALKLSKME+FTGRSAPTVIT
Sbjct:  474 VNKIVKGIRSDVASVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.528e-48
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN ++KGI SDVS VV+ADEFEYKDPVDGS+SKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD SK GRDSQEALAPLVEVALKLSKM+++T RSAPTVIT
Sbjct:  475 VNKLIKGIRSDVSNVVHADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDSSKIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.255e-47
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN+I+KG  SDVSKVV+ DEFEY DPVDGSIS HQGIRYLFEDGSRL+FRLSGTGSEGATIRLYIEQYEKDPSK GR S EALAPLVE ALKLSKME+FTGRSAPTVIT
Sbjct:  474 VNEIIKGASSDVSKVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.387e-46
Identity = 91/109 (83.49%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN+IVKG+ S V+ V+ ADEFEYKDPVDGS+SKHQGIRY+FEDGSRL+FRLSGTGSEGATIRLYIEQYEKD SKTGRDSQEAL PLV+VALKLSKM++F+GRS PTVIT
Sbjct:  475 VNNIVKGVHSGVANVIAADEFEYKDPVDGSVSKHQGIRYMFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDSSKTGRDSQEALKPLVDVALKLSKMQEFSGRSEPTVIT 583          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.091e-46
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN ++K I SDVS+VV ADEFEYKDPVDGS+SKHQGIRYLF DGSRLVFRLSGTGS GATIR+YIEQYEKD SKTGRDSQEALAPLV+VALKLSKM+++TGRSAPTVIT
Sbjct:  475 VNKLIKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGRDSQEALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.091e-46
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN I+KGI  +V+ V +ADEFEYKDPVDGS+SKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD SK GRDSQ+AL PLV+VALKLSKM++FTGRS+PTVIT
Sbjct:  477 VNKIIKGIHPEVANVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKIGRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.174e-45
Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN +VK I SDVS+VV ADEFEYKDPVDGS+SKHQGIRYLF DGSRLVFRLSGTGS GATIR+YIEQYE+D SKTGRDSQ+ALAPLV+VALKLSKM+++TGRSAPTVIT
Sbjct:  475 VNKLVKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.029e-41
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = -1
Query:  420 VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 746
            VN ++K I  +V+ VV+ADEFEY DPVDGS+SKHQGIRYLF DGSRLVFRLSGTGS GATIR+YIEQYEKD SKTGR+S +AL+PLV+VALKLSK+++ TGRSAPTVIT
Sbjct:  473 VNKLIKEIQPNVADVVSADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGRESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581          
BLAST of CX043488 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.171e-31
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  420 VSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 713
            V  V  AD FEY DPVDGSISK+QG+R +F DGSR++FRLSGTGS GATIRLYI+ YEKD +K  +D Q  LAPL+ +ALK+S++++ TGR+APTVIT
Sbjct:  465 VYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
The following BLAST results are available for this feature:
BLAST of CX043488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMC_POPTN2.287e-4990.83Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGMC1_ARATH1.482e-4888.99Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC_SOLTU2.528e-4888.07Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGMC_PEA1.255e-4787.16Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGMC_MESCR1.387e-4683.49Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC2_MAIZE3.091e-4685.32Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC2_ARATH3.091e-4683.49Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC1_MAIZE1.174e-4584.40Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC_BROIN1.029e-4177.06Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]
PGM1_RAT8.171e-3165.31Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D04-G7-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043488 ID=CX043488; Name=CX043488; organism=Citrus sinensis; type=EST; length=746bp
AGTAGTCCCAGCATTTACAGCATTTATAGGCTTAACAAGATCCCCTGCCT
AGAAACCGTATATAACATCAGAAAGCTAAACCCATCCTTACACGCTTGTC
TCAGATATCATAACGTTAGAAAATTTAATAGACAAAACAGATGGTTTGTT
AGTTAATTAACAACATCCAAATTATTTTGAACATCAAAAATTTTAAACTG
CAGATACTCTTTGTTCCAGATACTCTCGTGTTTATGTCAAAGTAGGCAGA
ATGACAAACATTAAAAAACATTTGTAACTGGGTCAAGGGCAGAGTATGCA
AGTTTCAGCTGACAGTTCAGTTGTATAATGCCTGACATCATCAAGACAAA
ACCCCGTTTATTGCCAAAATGGACTTTCCATCTCATGGATGGCTCACGTG
TAGCAGCACTATGTGTTTATGTAATGACGGTAGGCGCTGATCGGCCAGTG
AACTGCTCCATTTTAGAAAGCTTTAGAGCAACCTCCACTAGAGGAGCAAG
CGCCTCCTGAGAATCTCTGCCAGTTTTTGAAGGATCCTTCTCATACTGCT
CAATATAGAGACGGATGGTTGCACCTTCAGAACCAGTCCCCGAGAGGCGG
AAAACCAATCGCGATCCGTCCTCAAACAAATATCGGATACCCTGGTGTTT
TGAGATGGAACCATCAACAGGATCTTTGTATTCAAATTCGTCTGCATTGA
CAACCTTCGACACATCTGAACAGATCCCCTTCACAATATCATTAAC
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