DY257638

Overview
NameDY257638
Unique NameDY257638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257638_ssr293 microsatellite DY257638_ssr293:293..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig703 contig Csv1_Contig703:149..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257638 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.411e-19
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 LLIVH*GGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFSVKVIESIKQYQNDVIPFLK 198
            LL+V  GGYHVTY+AYCLHA LEGVL +P   LSDPIAYYPE+EA +V  +ESIK Y  + +PFL+
Sbjct:  310 LLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLSDPIAYYPEEEANAVAAVESIKTYHTEFVPFLR 375
The following BLAST results are available for this feature:
BLAST of DY257638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HDA8_ARATH4.411e-1965.15Histone deacetylase 8 OS=Arabidopsis thaliana GN=H... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CE09FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257638 ID=DY257638; Name=DY257638; organism=Citrus sinensis; type=EST; length=327bp
CTTCTTATTGTCCATTAAGGTGGATATCATGTTACTTACTCAGCCTATTG
TCTTCATGCAACACTAGAAGGTGTCCTTAACCTCCCACTTGCCCTATTGT
CTGATCCCATTGCATATTACCCAGAGGATGAGGCATTTTCTGTAAAAGTT
ATTGAGTCCATTAAACAGTACCAAAATGATGTCATACCATTTTTAAAGGG
ATCTTGATATGGTGGATTTTTTTCTTTTTTCAAACCTCATTTAGAGATTG
TAAAACTATATTCATGTGTATTTTAGTTCTTAATTCACAAAAAAATAAAT
AAATAAATAACAAAGAGTTGATTGTAG
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