CX300933

Overview
NameCX300933
Unique NameCX300933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: BUP1_PONAB (Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.634e-58
Identity = 101/139 (72.66%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    1 WMEFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSATVGTLSEPMWSIEAR 417
            W EF+E AE G +T F  KLAK ++MV+VS ILERDSEH DV+WNTAVVI N G  +GK RKNHIPRVGDFNE+TYY+EGNLGHPVF+T FGRI +NICYGRH PLNW  Y +NGAEI+FNPSAT+G LSE +WSIEAR
Sbjct:  135 WTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWSIEAR 273          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: BUP1_HUMAN (Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.209e-58
Identity = 100/139 (71.94%), Postives = 115/139 (82.73%), Query Frame = 1
Query:    1 WMEFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSATVGTLSEPMWSIEAR 417
            W EF+E AE G +T F  KLAK ++MV+VS ILERDSEH DV+WNTAVVI N G  +GK RKNHIPRVGDFNE+TYY+EGNLGHPVF+T FGRI +NICYGRH PLNW  Y +NGAEI+FNPSAT+G LSE +W IEAR
Sbjct:  135 WTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEAR 273          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: BUP1_MOUSE (Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.082e-57
Identity = 100/139 (71.94%), Postives = 114/139 (82.01%), Query Frame = 1
Query:    1 WMEFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSATVGTLSEPMWSIEAR 417
            W EF+E AE G +T F  KLAKK+NMV+VS ILERD EH  V+WNTAVVI N G  +GK RKNHIPRVGDFNE+TYY+EGNLGHPVF+T FGRI +NICYGRH PLNW  Y +NGAEI+FNPSAT+G LSE +W IEAR
Sbjct:  135 WTEFAESAEDGLTTRFCQKLAKKHNMVVVSPILERDREHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGELSESLWPIEAR 273          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: BUP1_RAT (Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.257e-57
Identity = 99/139 (71.22%), Postives = 114/139 (82.01%), Query Frame = 1
Query:    1 WMEFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSATVGTLSEPMWSIEAR 417
            W EF+E AE G +T F  KLAKK+NMV++S ILERD +H  V+WNTAVVI N G  +GK RKNHIPRVGDFNE+TYY+EGNLGHPVF+T FGRI +NICYGRH PLNW  Y +NGAEI+FNPSAT+G LSE MW IEAR
Sbjct:  135 WTEFAESAEDGLTTRFCQKLAKKHNMVVISPILERDRDHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSVNGAEIIFNPSATIGELSESMWPIEAR 273          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: BUP1_DICDI (Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.914e-56
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 1
Query:    1 WMEFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSATVGTLSEPMWSIEAR 417
            W+EF+E A TG S  F+ ++A+KYNMVI+S +LERD  H   I NTAVV+GN GN IGK RKNHIPR GDFNE+TYY+E  LGHPVFET +G+I INICYGRH  LNW +YGLNGAEIVFNPSATVG LSEPMW +EAR
Sbjct:  138 WVEFAESASTGQSIKFIQRMARKYNMVIISPMLERDDVHASTIHNTAVVVGNNGNIIGKSRKNHIPRTGDFNESTYYMESTLGHPVFETIYGKIAINICYGRHHNLNWLAYGLNGAEIVFNPSATVGELSEPMWGVEAR 276          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: AGUB_SOLTU (N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   31 GHSTLF-LSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSA 372
            GH T+  +  LAK+  +VI  S  E   E N+  +N+  +I   G  +G  RK+HIP    + E  Y+  G+ G  VF+T + +IG+ IC+ +  P   ++  L GAE++F P+A
Sbjct:   71 GHPTIVRMQNLAKELGVVIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTA 182          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: AGUB_SOLLC (N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   31 GHSTLF-LSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSA 372
            GH T+  +  LAK+  +VI  S  E   E N+  +N+  +I   G  +G  RK+HIP    + E  Y+  G+ G  VF+T + +IG+ IC+ +  P   ++  L GAE++F P+A
Sbjct:   71 GHPTIVRMQNLAKELGVVIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKYYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTA 182          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: AGUB_ARATH (N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   49 LSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSA 372
            + KLAK+  +VI  S  E   E N   +N+  +I   G  +G  RK+HIP    + E  Y+  G+ G  VF+T F +IG+ IC+ +  P   ++  L GAEI+F P+A
Sbjct:  107 MQKLAKELGVVIPVSFFE---EANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 211          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: AGUB_ORYSJ (N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    4 MEFSEEAET--GHSTLF-LSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIVFNPSA 372
            ++F + A+   G+ T+    KLAK+  +VI  S  E   E N+  +N+  +I   G  +G  RK+HIP    + E  Y+  G+ G   F+T +  IG+ IC+ +  P   ++  L GAEI+F P+A
Sbjct:   63 LDFFQRAKPYKGNPTIIRFQKLAKELEVVIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185          
BLAST of CX300933 vs. ExPASy Swiss-Prot
Match: YCU9_SCHPO (Probable nitrilase C965.09 OS=Schizosaccharomyces pombe GN=SPCC965.09 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 35/117 (29.91%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    7 EFSEEAETGHSTLFLSKLAKKYNMVIVSSILERDSEHNDVIWNTAVVIGNRGNYIGKVRKNHIPRVGDFNEATYYLEGNLGHPVFETDFGRIGINICYGRHIPLNWQSYGLNGAEIV 357
            + +E A  G S   +S LA KY++ I+    E++ + +++I+N+ + I   GN  G  RK H+     F+    + +     P+FET FG++G+ IC+    P   + + LNGA+++
Sbjct:   59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLL 170          
The following BLAST results are available for this feature:
BLAST of CX300933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BUP1_PONAB1.634e-5872.66Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2... [more]
BUP1_HUMAN6.209e-5871.94Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1... [more]
BUP1_MOUSE3.082e-5771.94Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2... [more]
BUP1_RAT5.257e-5771.22Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1... [more]
BUP1_DICDI9.914e-5670.50Beta-ureidopropionase OS=Dictyostelium discoideum ... [more]
AGUB_SOLTU1.038e-1234.78N-carbamoylputrescine amidase OS=Solanum tuberosum... [more]
AGUB_SOLLC1.038e-1234.78N-carbamoylputrescine amidase OS=Solanum lycopersi... [more]
AGUB_ARATH3.944e-1237.04N-carbamoylputrescine amidase OS=Arabidopsis thali... [more]
AGUB_ORYSJ1.957e-1133.33N-carbamoylputrescine amidase OS=Oryza sativa subs... [more]
YCU9_SCHPO5.695e-1129.91Probable nitrilase C965.09 OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC08003H03SK PhyRootSw1 Citrus sinensis cDNA clone C08003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300933 ID=CX300933; Name=CX300933; organism=Citrus sinensis; type=EST; length=419bp
TGGATGGAATTTTCTGAAGAGGCTGAAACAGGTCACAGTACACTCTTTTT
ATCCAAATTAGCTAAAAAATACAATATGGTCATTGTTTCCTCCATTTTAG
AAAGAGACTCTGAACACAATGATGTAATTTGGAATACAGCCGTAGTGATT
GGTAATAGAGGTAATTATATTGGAAAGGTGAGAAAGAATCATATACCACG
TGTTGGTGATTTTAATGAGGCTACCTATTATTTGGAAGGTAATTTAGGAC
ATCCTGTTTTTGAGACTGATTTTGGTAGAATTGGAATTAATATTTGTTAT
GGTAGACACATTCCACTCAATTGGCAATCTTATGGTTTGAATGGTGCTGA
AATTGTTTTCAATCCATCAGCCACAGTTGGTACCCTATCTGAACCCATGT
GGAGTATTGAGGCTAGAAA
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