CX300931

Overview
NameCX300931
Unique NameCX300931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:404..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300931 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.636e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 2
Query:    2 TGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 175
            TGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   40 TGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CX300931 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    5 GIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 172
            G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   44 GAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CX300931 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    5 GIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 172
            G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   44 GAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CX300931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI6.636e-28100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.454e-1462.30Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.535e-1359.02Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC08003H01SK PhyRootSw1 Citrus sinensis cDNA clone C08003H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300931 ID=CX300931; Name=CX300931; organism=Citrus sinensis; type=EST; length=402bp
GACTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTGAGAGAGGATT
CTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTACAGG
CCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGATGCT
GTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTGGCGCATAGCAGCA
GATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGATGTTGTTACAG
TAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTTGTATTGATATCAACT
GTTATTGACAACTTTTAATAGTGCATTTCCATGATTTTGTCTATTAACTT
GTCAATAAAAGTAAAGAATTCCTGTATTGCAAAAAAAAAAAAAAAAAAAA
AA
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