CX043463

Overview
NameCX043463
Unique NameCX043463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3570 contig Csv1_Contig3570:2..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS3_SPIOL (Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.877e-63
Identity = 111/134 (82.84%), Postives = 125/134 (93.28%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRFHKQLQHFPMIVC KVR+G+QRIVR+KEGDP GRH+VIVDDLVQSGGTLIECQKVLAAHGAAK+SAYVTHGIFPN SWERF+ DT G PE G+T+FWI+DSCP+TVK V ++PPFEV+SLAGSIA+ALQI
Sbjct:  273 AWKRFHKQLQHFPMIVCAKVREGDQRIVRLKEGDPTGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGIFPNKSWERFKPDTAGCPEEGMTHFWITDSCPLTVKMVKNRPPFEVISLAGSIAAALQI 406
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS3_ARATH (Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsis thaliana GN=PRS3 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.322e-61
Identity = 111/134 (82.84%), Postives = 123/134 (91.79%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRFHKQLQH+P IVCNKVR G++RIVRIKEGD  GRH+VIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFP +SW+RF+ DT G P  GL+YFWI+DSC +TVKEVM+KPPFEVLSLAGSIASALQ+
Sbjct:  278 AWKRFHKQLQHYPTIVCNKVRMGDKRIVRIKEGDAEGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPRSSWKRFKLDTKGDPAEGLSYFWITDSCGMTVKEVMNKPPFEVLSLAGSIASALQV 411
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS3_ORYSJ (Ribose-phosphate pyrophosphokinase 3 OS=Oryza sativa subsp. japonica GN=Os01g0723600 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.816e-59
Identity = 106/134 (79.10%), Postives = 119/134 (88.81%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRF+KQLQHFPM+VCNKVR+G QRIVRIKEGDPRGRH+VIVDDLVQSGGTLIECQKVLA HGAAK+SAYVTHGIFPN SWE+F+ D G  P  GL++FWI+DSCP+TV  V  + PFE+LSLAG IASALQI
Sbjct:  276 AWKRFYKQLQHFPMVVCNKVREGEQRIVRIKEGDPRGRHVVIVDDLVQSGGTLIECQKVLAEHGAAKVSAYVTHGIFPNKSWEKFQPDNGEGPGHGLSHFWITDSCPLTVNAVKDRQPFEILSLAGPIASALQI 409
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS4_SPIOL (Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRFHKQL HFPM+VC KVR+G++RIVR+KEG+P G H+VIVDDLVQSGGTLIECQKVLAAHGA K+SAYVTH +FP  S+ERF     G  +   TYFWI+DSCP TVK + +K PFEVLSLAGSIA ALQI
Sbjct:  186 AWKRFHKQLDHFPMVVCAKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGATKVSAYVTHAVFPKNSFERFTHKDDGS-DKAFTYFWITDSCPRTVKSIANKAPFEVLSLAGSIADALQI 318
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS4_ARATH (Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsis thaliana GN=PRS4 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 96/134 (71.64%), Postives = 110/134 (82.09%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRFHK L H+P +VC KVR+G++RIVR+KEG+P G H+VIVDDLVQSGGTLIECQKVLAAHGA K+SAYVTHG+FP +SWERF     G  E    YFWI+DSCP TVK + +K PFEVLSLAGSIA ALQI
Sbjct:  205 AWKRFHKLLDHYPTVVCTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAVKVSAYVTHGVFPKSSWERFTHKKNGL-EEAFAYFWITDSCPQTVKAIGNKAPFEVLSLAGSIADALQI 337
[Close]
BLAST of CX043463 vs. ExPASy Swiss-Prot
Match: KPRS4_ORYSJ (Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0714600 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 3 
Query:    3 AWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQI 404
            AWKRFHK L +FPM+VC KVR+G++RIVRIKEG+P GRH+VIVDDLVQSGGTL ECQKVLAAHGAAK+SAYVTH +FP  S+ERF             YFWI+DSCP TVK +  +PPFEVLSLAGSIA ALQI
Sbjct:  192 AWKRFHKLLLNFPMVVCAKVREGDKRIVRIKEGNPEGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTHTNSAGSADKFAYFWITDSCPQTVKAINQQPPFEVLSLAGSIADALQI 325
The following BLAST results are available for this feature:
BLAST of CX043463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KPRS3_SPIOL7.877e-6382.84Ribose-phosphate pyrophosphokinase 3, mitochondria... [more]
KPRS3_ARATH4.322e-6182.84Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsi... [more]
KPRS3_ORYSJ1.816e-5979.10Ribose-phosphate pyrophosphokinase 3 OS=Oryza sati... [more]
KPRS4_SPIOL8.171e-5272.39Ribose-phosphate pyrophosphokinase 4 OS=Spinacia o... [more]
KPRS4_ARATH8.171e-5271.64Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsi... [more]
KPRS4_ORYSJ9.034e-5170.90Ribose-phosphate pyrophosphokinase 4 OS=Oryza sati... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11C01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C01-E1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043463 ID=CX043463; Name=CX043463; organism=Citrus sinensis; type=EST; length=635bp
GTGCATGGAAACGATTTCATAAGCAGCTGCAGCACTTTCCAATGATTGTT
TGTAATAAAGTTCGGGATGGTAACCAAAGGATTGTACGCATTAAGGAGGG
AGACCCTCGAGGACGCCACATTGTGATTGTTGATGATCTGGTTCAATCAG
GTGGCACTCTAATTGAATGTCAGAAAGTGCTAGCAGCCCATGGAGCAGCA
AAAATAAGCGCTTATGTGACGCATGGGATTTTTCCTAACGCGTCGTGGGA
ACGATTTGAACAAGATACTGGAGGAAAACCTGAGTCTGGCTTGACCTACT
TCTGGATTAGTGACTCCTGCCCAGTGACTGTAAAAGAGGTTATGAGCAAA
CCACCATTTGAAGTTCTCAGTCTTGCGGGTTCCATTGCATCTGCTCTACA
GATATAAATTTGTTTTGAAATATCTAGTCATATCATATATAGAGAAGTTC
CAAGCTGATTTTGAAGGAGCAATCTCACCAATGAATAAAGAAAAACAAAA
GAAAGCGGCAGAGATATATTATTTTTGGATACTCGTTTGCCTTTGTTTAT
TCAAACATTTACCGGTGTTTTGATCTGAATCTGATTGAATAAAATCAAAC
TATTATGTGTTTTTTTATCCGATTGAATAAAAAAA
back to top