CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1561 contig Csv1_Contig1561:31..408. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA1_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.160e-33
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            M+AT+T        SCSSK++KR           +KMSVSV+E+KK+F+L+ SEEAFN    LMPGGVNSPVRAFKSVGGQP++ +SV+GS MWDIDGNEYIDY+GSW
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSW 108          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_BRANA (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.049e-32
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            M+AT+T        SCSSK++KR           +KMSVSV+E+KK+FTL+ SEEAFN    LMPGGVNSPVRAFKSVGGQP++ +SV+GS MWDIDGNEYIDY+GSW
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPSTRCS-IKMSVSVDEKKKSFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSW 107          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA2_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.243e-29
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            MAAT+T        SCS+K +KR           +KMSVSVEE+ K FTL+ SEEAFN    LMPGGVNSPVRAFKSVGGQP+V +S +GS + DIDGNEYIDY+GSW
Sbjct:    1 MAATLTGSGIALGFSCSAKFSKR--ASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSW 106          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ORYSJ (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.286e-26
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            V+ ++SVE+ +K +T++ SEE FN   ELMPGGVNSPVRAFKSVGGQPIVF+SV+GS MWD+DGNEYIDY+GSW
Sbjct:   39 VRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSRMWDVDGNEYIDYVGSW 112          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_TOBAC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.680e-26
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +KM+ SV+E+KK FTL+ SEEAF+   ELMPGGVNSPVRAFKSVGGQPI+ +SV+GS M DIDGNEYIDY+GSW
Sbjct:   39 IKMTASVDEKKKTFTLQKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSW 112          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_HORVU (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 2.865e-26
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            V+ +VS++E  K +T++ SEE FN   ELMPGGVNSPVRAFKSVGGQPIVF+SV+GSHMWD+DGNEYIDY+GSW
Sbjct:   32 VRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDVDGNEYIDYVGSW 103          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SOLLC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.742e-26
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            ++M+ SV+E+KK FTL+ SEEAF+   ELMPGGVNSPVRAFKSVGGQPI+ +SV+GS M DIDGNEYIDY+GSW
Sbjct:   42 IRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSW 115          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SOYBN (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.502e-24
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:  157 VKMSVSVEEQKKN-FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            V M+VS++ +  N  TL  SEEAF    ELMPGGVNSPVRAFKSVGGQPIV +SV+GS MWDIDGNEYIDY+GSW
Sbjct:   26 VAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSW 100          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CYAP4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    SEE F    +LMPGGVNSPVRAFKSVGG PIVF+ VEG+++WD+DGN+YIDY+GSW
Sbjct:    6 FNTTKSEEIFAAAQKLMPGGVNSPVRAFKSVGGNPIVFDRVEGAYVWDVDGNQYIDYVGSW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_THEEB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemL PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.927e-20
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    S+E F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+G+H+WD+DGN+YIDY+GSW
Sbjct:   11 FQTTKSQEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSW 71          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA1_ARATH3.160e-3362.04Glutamate-1-semialdehyde 2,1-aminomutase 1, chloro... [more]
GSA_BRANA2.049e-3262.96Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA2_ARATH1.243e-2961.11Glutamate-1-semialdehyde 2,1-aminomutase 2, chloro... [more]
GSA_ORYSJ1.286e-2671.62Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_TOBAC1.680e-2674.32Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_HORVU2.865e-2672.97Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOLLC3.742e-2672.97Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOYBN3.502e-2472.00Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_CYAP45.234e-2068.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_THEEB8.927e-2067.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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