EY665146

Overview
NameEY665146
Unique NameEY665146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:311..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.079e-47
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 1
Query:   13 QKNSFGGLKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 330
            +K+S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:   51 RKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.794e-44
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   37 KAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 330
            +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   68 RAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.163e-40
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1
Query:   37 KAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 330
            +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   43 RAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.736e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   49 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 327
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   43 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 159
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of EY665146 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   37 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 315
            KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of EY665146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH2.079e-4787.74Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL4.794e-4489.80Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU7.163e-4081.63Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU6.736e-2252.69Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA1.273e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE6.319e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665146 ID=EY665146; Name=EY665146; organism=Citrus sinensis; type=EST; length=497bp
CGCCACCTTCGCCAAAAGAACAGCTTCGGCGGCCTTAAAGCTGAGCTGAG
CACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCA
GGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTG
CCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCAA
GGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATTG
TTGATGTTCTTGCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATC
TTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGGTTGATTTTG
TTATTTGTACTGTCTCTCTTTGTCTCTTTTAGTTTCTTAATTTCTCAAGT
GTTGCGCTTTGTATAGTTAAATAAATTTCCTAGCATTTAATGGATGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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