CX300924

Overview
NameCX300924
Unique NameCX300924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.258e-30
Identity = 69/121 (57.02%), Postives = 75/121 (61.98%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPD-------PATP---PSHHPH-----------QNPK-IHDHGQDLNLAF 299
            ARP+K+QA+NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVGGG             + +       PAT      HH H           QNPK +    QDLNL F
Sbjct:   45 ARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNHSDSTQPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDLNLGF 165          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.335e-28
Identity = 71/151 (47.02%), Postives = 79/151 (52.32%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG-------------XXXXXXXXXXXXXLPDPATPPSHHPHQNPKIHDHG-------------------QDLNLAFPAATTQGYR---SISELVQL 350
            ARP+K+QALNCPRCNS NTKFCYYNNYSLTQPRYFCK CRRYWT GGSLRNIPVGGG                            +  TP    PH NPKI +                     +DLNLAF      G+    SI E +Q+
Sbjct:   41 ARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGNAHEVKDLNLAFSQGFGIGHNHHSSIPEFLQV 191          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 5.202e-28
Identity = 70/138 (50.72%), Postives = 83/138 (60.14%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPDPATPPSHHPHQNP------KIHD----HGQDLN-LAFPAATTQGYRSI--SELVQLPNIDNKSQI 377
            ARPQ++  LNCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG                   T PS  P  NP      +IH+      QDLN L+FP    Q +  +  S+ +Q+P ++    I
Sbjct:   74 ARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSSSSSS-NILQTIPSSLPDLNPPILFSNQIHNKSKGSSQDLNLLSFPVMQDQHHHHVHMSQFLQMPKMEGNGNI 208          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.304e-26
Identity = 63/121 (52.07%), Postives = 74/121 (61.16%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPDPATPPSHHPHQNPKI-------HDHGQDLN-LAFPAATTQGYRSISEL 341
            ARPQ++  +NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG              L  P+ P    P  NP I       +   +DLN L+FP      + ++  L
Sbjct:   68 ARPQEK--VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGS---SRKNKRSSTPLASPSNPKL--PDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHHALELL 181          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 3
Query:    9 PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            P  E ALNCPRC+STNTKFCY+NNYSLTQPR+FCKTCRRYWT GGSLRN+PVGGG
Sbjct:   70 PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGG 124          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.156e-25
Identity = 60/117 (51.28%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   21 QALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPDPATPPSHH--PHQNPKI---------HDHGQDLNLAFPAATTQGYRSISE 338
            +A NCPRC S NTKFCYYNNYSL+QPRYFCK+CRRYWT+GG+LRN+PVGGG               +     + H  P QNP I         +DH  DLNLAF  AT Q +   S+
Sbjct:   46 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAF--ATLQKHHLSSQ 160          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.383e-25
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 RPQK-EQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            RPQ  E AL CPRC+STNTKFCYYNNYSLTQPRYFCK+CRRYWT+GG+LRNIPVGGG
Sbjct:   47 RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGG 103          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 59/109 (54.13%), Postives = 67/109 (61.47%), Query Frame = 3
Query:    6 RPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG-------XXXXXXXXXXXXXLPD---PATPPSHHPHQNP-KIHDHGQDLNLAF 299
            RPQ+ +  NCPRCNS+NTKFCYYNNYSL QPRY CK+CRRYWTEGGSLRN+PVGGG                    LPD   P    S     NP K H +  DL+L+F
Sbjct:   63 RPQEPR--NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKLPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSF 169          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.566e-24
Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 3
Query:    6 RPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPD---------PATPPSHHPHQNPKIHDHGQDL-NLAFPAATTQG 320
            RPQ  +AL CPRC+S NTKFCYYNNYS++QPRYFCK CRRYWT GG+LRN+P+GGG                         P +P ++    N  I+ H   + N+  P  TT G
Sbjct:   53 RPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPTTMG 167          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF32_ARATH (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 3
Query:   18 EQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXL---PDP-------ATPPSHHPHQNPKIHDHGQDLNLAFPAATTQ 317
            EQ+L CPRC+STNTKFCYYNNYSL+QPRYFCK+CRRYWT+GG LRNIP+GG              L   P+P       + P +   + N  I +   +L LA+     Q
Sbjct:   37 EQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSATKSLRTTPEPTMTHDGKSFPTASFGYNNNNISNEQMELGLAYALLNKQ 146          
The following BLAST results are available for this feature:
BLAST of CX300924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF46_ARATH3.258e-3057.02Dof zinc finger protein DOF4.6 OS=Arabidopsis thal... [more]
DOF18_ARATH2.335e-2847.02Dof zinc finger protein DOF1.8 OS=Arabidopsis thal... [more]
DOF25_ARATH5.202e-2850.72Dof zinc finger protein DOF2.5 OS=Arabidopsis thal... [more]
DOF37_ARATH8.304e-2652.07Dof zinc finger protein DOF3.7 OS=Arabidopsis thal... [more]
DOF36_ARATH2.416e-2585.45Dof zinc finger protein DOF3.6 OS=Arabidopsis thal... [more]
DOF21_ARATH3.156e-2551.28Dof zinc finger protein DOF2.1 OS=Arabidopsis thal... [more]
DOF53_ARATH5.383e-2585.96Dof zinc finger protein DOF5.3 OS=Arabidopsis thal... [more]
DOF41_ARATH7.030e-2554.13Dof zinc finger protein DOF4.1 OS=Arabidopsis thal... [more]
PBF_MAIZE1.566e-2446.09Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=... [more]
DOF32_ARATH1.015e-2348.18Dof zinc finger protein DOF3.2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC08003G05SK PhyRootSw1 Citrus sinensis cDNA clone C08003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300924 ID=CX300924; Name=CX300924; organism=Citrus sinensis; type=EST; length=383bp
AAGCAAGGCCCCAAAAGGAACAAGCTTTGAACTGCCCAAGGTGCAATTCA
ACTAACACAAAGTTTTGTTACTACAACAATTATAGTCTCACTCAGCCTAG
GTATTTTTGCAAGACTTGTAGAAGGTACTGGACTGAGGGTGGGTCTTTGA
GAAACATTCCTGTAGGTGGTGGTTCAAGGAAGAACAAAAGATCTTCATCA
TCTTCTAAAAAGCTTCCTGATCCTGCTACACCACCAAGTCATCATCCTCA
TCAAAACCCTAAGATCCATGATCATGGCCAAGATCTTAACCTGGCTTTCC
CAGCTGCCACTACTCAAGGTTATAGGAGCATCTCTGAACTGGTTCAACTA
CCCAATATTGACAACAAGAGCCAAATTCCAATA
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