EH406456

Overview
NameEH406456
Unique NameEH406456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH406456 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.258e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 QGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 132
            QGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct:   52 QGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
[Close]
BLAST of EH406456 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.138e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 QGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 132
            QGIPHLRP+EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   52 QGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EH406456 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.098e-17
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 132
            QGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   52 QGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EH406456 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.098e-17
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 132
            QGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   52 QGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EH406456 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.469e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 132
            QGIPHLRPAEYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:   52 QGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95
The following BLAST results are available for this feature:
BLAST of EH406456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_PEA8.258e-1897.7360S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH3.138e-1795.4560S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL34_TOBAC4.098e-1795.4560S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL342_ARATH4.098e-1795.4560S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH3.469e-1690.9160S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AE02FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406456 ID=EH406456; Name=EH406456; organism=Citrus sinensis; type=EST; length=335bp
CAAGGAATTCCTCACTTGAGACCTGCTGAGTACAAGAGGTCTAGACTATC
TCGAAATAGGAGGACTGTCAACCGTGCCTATGGGGGTGTATTATCTGGAG
GTGCTGTCAGGGAGAGGATTATCCGGGCCTTTTTGGTGGAGGAGCAGAAG
ATTGTCAAGAAAGTGCTGAAGATTCAGAAGGCCAAAGAAAAGCTGGCATC
TAAGAGTTAAATTGAGACAGCAGCTTTTGTTTTGCAGTTTTAATTTTCTT
ATGAAATTTTGACTTGTATGAATTATTTACAATGGCATTTTGTGCCGTTC
TATTTAAACGTGAATGAGCATTTGGTTTTTGCTTG
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