EY665123

Overview
NameEY665123
Unique NameEY665123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6119 contig Csv1_Contig6119:45..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 357.836 bits (917), Expect = 4.531e-98
Identity = 176/203 (86.70%), Postives = 187/203 (92.12%), Query Frame = 1
Query:  175 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCCST 783
            MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGNK DLT N+ + YETAKAFADEIGIPFMETSAKD+TNV QAFMAM+A IK+RM   P   NA P TVQI+ QPVA K+GCCST
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.729e-98
Identity = 178/203 (87.68%), Postives = 187/203 (92.12%), Query Frame = 1
Query:  175 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCCST 783
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK DLTANKVV+ ETAKAFADE+GIPFMETSAK++TNV QAFMAMAA IKDRM   P   NA P TVQI+ QPV  K+ CCS+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCSS 203          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 3.039e-94
Identity = 169/202 (83.66%), Postives = 181/202 (89.60%), Query Frame = 1
Query:  175 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCCS 780
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNKCDL  N+VVSYE  KA ADEIGIPF+ETSAKD+TNV +AFM MA  IK+RM   P    + P TVQ++ QPVA +S CCS
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 321.242 bits (822), Expect = 4.700e-87
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 1
Query:  169 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV Q+FM MAA IK RMG       A    V+I+  PV    G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 321.242 bits (822), Expect = 4.700e-87
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 1
Query:  169 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV Q+FM MAA IK RMG       A    V+I+  PV    G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 321.242 bits (822), Expect = 4.700e-87
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 1
Query:  169 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV Q+FM MAA IK RMG       A    V+I+  PV    G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 321.242 bits (822), Expect = 4.700e-87
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 1
Query:  169 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV Q+FM MAA IK RMG       A    V+I+  PV    G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.047e-86
Identity = 159/201 (79.10%), Postives = 169/201 (84.08%), Query Frame = 1
Query:  175 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV QAFM MAA IK RMG       +    V I+  PV    G C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.333e-86
Identity = 161/202 (79.70%), Postives = 173/202 (85.64%), Query Frame = 1
Query:  175 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKR-QPVAXKSGCC 777
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLT+ KVV Y  AKAFADEIGIPF+ETSAK++TNV QAFM MAA IK+RM   P    A    V+ +  +P+  KS  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSC 202          
BLAST of EY665123 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 3.046e-86
Identity = 158/203 (77.83%), Postives = 171/203 (84.24%), Query Frame = 1
Query:  169 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVGQAFMAMAAFIKDRMGKSPFMXNAXPXTVQIKRQPVAXKSGCC 777
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNV Q+FM MAA IK RMG       A    V+I+  PV    G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
The following BLAST results are available for this feature:
BLAST of EY665123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH4.531e-9886.70Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTM2_MAIZE7.729e-9887.68GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RIC1_ORYSJ3.039e-9483.66Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1A_RAT4.700e-8778.33Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE4.700e-8778.33Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN4.700e-8778.33Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA4.700e-8778.33Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1_DISOM1.047e-8679.10Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
YPTC1_CHLRE2.333e-8679.70GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1A_PIG3.046e-8677.83Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665123 ID=EY665123; Name=EY665123; organism=Citrus sinensis; type=EST; length=878bp
CCTTTGCTTGTCGTTTCAGTATTTTCTTTCTTTTTTTTCTTTTTTGTCTT
GTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACGA
GATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTTT
TTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGTT
TAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTCT
TGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGGA
GTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAACT
TCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGCA
GCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGAC
CAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTA
TGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCA
CTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGAA
ATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGGG
ACAGGCATTCATGGCCATGGCTGCTTTCATCAAGGATAGAATGGGCAAGT
CACCATTCATGANCAATGCANGGCCTNCAACTGTACAGATCAAAAGGCAG
CCTGTTGCACANAAAAGTGGCTGCTGCTCTACTAAGTATCATTGGATANT
ATCTGCCNGGGGTCTGCTGGACCCAAGGGGGGGGAATGCTTTTATCTTTT
CAGTTGAAAGCTTTGTATCTGGACCAAC
back to top