CX300920

Overview
NameCX300920
Unique NameCX300920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:736..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 172
            A+VSWSW NHWVYW GPLIGGG+AG+VYE  FIN +HEQLPTT+Y
Sbjct:  206 AVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 250          
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 172
            A+VSWSW NHWVYW GPLIGGG+AG+VYE  FIN +HEQLPTT+Y
Sbjct:  205 AVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 249          
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.091e-17
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 172
            A+VSW+W NHWVYW GPL+GGG+AG++YE FFIN +HEQLPTT+Y
Sbjct:  207 AVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLPTTDY 251          
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 172
            ALVSWSW++ WVYWVGPLIGGGLAG++YE  FI+ +HEQLPTT+Y
Sbjct:  206 ALVSWSWESQWVYWVGPLIGGGLAGVIYEVLFISHTHEQLPTTDY 250          
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.688e-16
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ-SHEQLPTTEY 172
            A+VSW+W NHWVYW GPLIGGGLAGI+Y+F FI++ +HEQLPTT+Y
Sbjct:  208 AVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFIDENAHEQLPTTDY 253          
BLAST of CX300920 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:   38 ALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 172
            ALVSW W   WVYWVGPLIGGGLAG++YE  FI+ +HEQLP+T+Y
Sbjct:  206 ALVSWEWGYQWVYWVGPLIGGGLAGVIYELLFISHTHEQLPSTDY 250          
The following BLAST results are available for this feature:
BLAST of CX300920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TIP1_MEDTR8.356e-1877.78Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA8.356e-1877.78Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP11_ARATH1.091e-1773.33Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ5.416e-1775.56Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH2.688e-1673.91Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_MAIZE1.742e-1571.11Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC08003G01SK PhyRootSw1 Citrus sinensis cDNA clone C08003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300920 ID=CX300920; Name=CX300920; organism=Citrus sinensis; type=EST; length=379bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTTTGGTGAGCT
GGAGCTGGGACAACCACTGGGTCTACTGGGTCGGGCCACTCATCGGTGGT
GGGCTAGCTGGCATCGTCTACGAGTTCTTCTTCATTAACCAGTCGCATGA
GCAGCTCCCAACAACCGAGTACTAAGCTAAAAGCTTGCCATCTATGTGAG
TTTGCACGGATGTTGTATTTAATTTGCTTTTACCGAGGTTCTTTCTTTTT
ATTTTTAATTTGTGTTTAATTTATGGCCGTTGATCTGTTTCCATCGTCAT
GAGCTGCTGGATTATTGTATCGCGATAATTATGGAGTCCCAGGCTATGGC
TTTGTCTTTCTAAAAAAAAAAAAAAAAAA
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