FC871836

Overview
NameFC871836
Unique NameFC871836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4671 contig Csv1_Contig4671:286..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.395e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 273
            LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE
Sbjct:  232 LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.443e-40
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    1 LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 276
            LG+LDSYEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Sbjct:  235 LGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 326          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.366e-21
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   13 DSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            D+YE E  E   EIL NL     S  +F A+LEN+ SEQG+RMSAMD+++RNAGEM+D+LT+ YNR+RQA+IT ELIEIISGA +L
Sbjct:  208 DNYEFEPDED--EILSNLLPKNISTQIFKAMLENSASEQGSRMSAMDNATRNAGEMVDKLTIEYNRSRQAAITKELIEIISGAESL 291          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.834e-19
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   16 SYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            +YE E  E  GEIL  L     +  +  A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  210 AYEYEPEE--GEILAALLPKNLTVQILRALLENAASEQGARMSAMDSATRNAGEMIKKQTLVYNRTRQAMITKELIEIISGAEAL 292          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_GLUDA (ATP synthase gamma chain OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.834e-19
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 GELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            GE  SYE E GE   ++L +L        ++  +LE+A  EQGARM+AMD+++RNAG+ +DRLTLTYNRTRQ +IT ELIEIISGA A+
Sbjct:  207 GERASYEFEPGEE--QLLSSLLPRNLQVQLYATMLESAAGEQGARMTAMDNATRNAGKAIDRLTLTYNRTRQTNITNELIEIISGAQAV 293          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.396e-19
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   16 SYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            +YE E  E  GEIL  L     +  +  A+LENA SEQGARMSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  210 AYEYEPDE--GEILAALLPKNLTVQILRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_ACICJ (ATP synthase gamma chain OS=Acidiphilium cryptum (strain JF-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.396e-19
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YEIE  +  G +L  L     +  +++A+LE+A  EQGARM+AMD+++RNAGEM++RLTL YNRTRQA+IT ELIEIISGA AL
Sbjct:  215 YEIEPDD--GTLLDRLLPRNLAVQIYSALLESAAGEQGARMTAMDNATRNAGEMINRLTLNYNRTRQANITKELIEIISGAEAL 296          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.087e-19
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YE E  E    +L++L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M+DRLT+ YNR+RQA IT+ELIEIISGA AL
Sbjct:  215 YEYEPSEEA--VLEDLLPRGIATQIFTALLENGASEQGARMSAMDNATRNAGDMIDRLTIEYNRSRQAVITSELIEIISGAEAL 296          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 44/74 (59.46%), Postives = 62/74 (83.78%), Query Frame = 1
Query:   49 EILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            +++++  EF  + ++F  + E ACSEQ +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct:  223 DVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 296          
BLAST of FC871836 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   19 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 270
            YE E  E K  IL  L     +  +++A+LE+A SEQGARM+AMD+++RNAG+M+ +LTL YNRTRQASIT ELIEIISGA A+
Sbjct:  214 YEFEPNEEK--ILAELLPRNLAVQVYSALLESAASEQGARMTAMDNATRNAGDMIKKLTLVYNRTRQASITKELIEIISGAEAV 295          
The following BLAST results are available for this feature:
BLAST of FC871836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
ATPG3_ARATH1.395e-4398.90ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG3_IPOBA1.443e-4091.30ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG_PELUB4.366e-2161.63ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_METNO1.834e-1963.53ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_GLUDA1.834e-1956.18ATP synthase gamma chain OS=Gluconacetobacter diaz... [more]
ATPG_METS42.396e-1962.35ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_ACICJ2.396e-1959.52ATP synthase gamma chain OS=Acidiphilium cryptum (... [more]
ATPG_JANSC4.087e-1959.52ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_DROME5.337e-1959.46ATP synthase subunit gamma, mitochondrial OS=Droso... [more]
ATPG_RHOCS6.971e-1959.52ATP synthase gamma chain OS=Rhodospirillum centenu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD06FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871836 ID=FC871836; Name=FC871836; organism=Citrus sinensis; type=EST; length=495bp
CTTGGTGAGCTAGACTCCTATGAAATTGAAGGCGGTGAAACAAAGGGTGA
AATACTTCAAAATCTGGCTGAGTTCCAATTCTCTTGTGTCATGTTCAATG
CGGTGTTGGAGAATGCCTGCAGTGAGCAAGGGGCAAGGATGTCTGCCATG
GATAGCTCAAGCAGAAATGCAGGAGAAATGCTTGATCGCCTCACTCTTAC
TTATAACAGAACTCGTCAAGCATCTATCACCACCGAGTTGATTGAGATTA
TATCTGGAGCATCAGCACTGGAAGGCTGATTACAAAAGCGACAGTGCTCA
CTTTTCTTGACAGTGACGAAATAAATCCTTGGTGGAGGCTTTGTTCAAAC
TTCAATGTGGTACTTTCATAAGAGTTTTTGTTGAGCTACTCCAATAATCT
CTCCAGTGTTAAAACTTGGGGAATTAACAATTATACTTGCGATATTTTCA
ATATAGTTTTTGATTCTCAATTAAAAAAAAAAAAAAAAAAAAAAA
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