EY665081

Overview
NameEY665081
Unique NameEY665081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6996 contig Csv1_Contig6996:192..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665081 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.825e-25
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  256 NSGRDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 597
            N+  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   77 NASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187          

HSP 2 Score: 28.8758 bits (63), Expect = 3.825e-25
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = 2
Query:  101 SPLSMQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLS 217
            SP  +QN  K     S PT    + S     TA+AGA+FS+LS
Sbjct:   17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLS 59          
BLAST of EY665081 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.271e-21
Identity = 50/111 (45.05%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  268 DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 600
            DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+NILQPALNQ+N+MRS+
Sbjct:   92 DNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199          

HSP 2 Score: 36.965 bits (84), Expect = 2.271e-21
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 2
Query:   59 LPQNSIKPGTTKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCD 226
            L  N     + KPTS P+S+   P GL+ S  P   S +    AIAGA+F+TL S D
Sbjct:   19 LNTNKTTSTSPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVD 73          
The following BLAST results are available for this feature:
BLAST of EY665081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH3.825e-2549.12Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL2.271e-2145.05Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665081 ID=EY665081; Name=EY665081; organism=Citrus sinensis; type=EST; length=703bp
CCACGCGTCCGGCAATGGCTACAACGGCTGTGCTCAATGCCAAGTGCTTC
AGCATCAGCTCCCCCAAAACAGCATCAAGCCTGGAACCACAAAACCCACT
TCCCCGCTCTCCATGCAAAACCTCCCAAAAGGCCTCACCGTCTCGTCAAA
ACCAACCGATTCATCATCACTAGCAGCCGGCACCGCCATTGCCGGAGCAA
TCTTCTCAACTCTGAGCTCATGCGATGCTGCTTTTGCCGCACAACAAATA
GCAGAAATAGCGGAAGGGACAACCGAGGGTTAGCACTATTGCTCCCAATC
ATCCCGGCCATAGCATGGGTGCTGTTCAACATTCTGCAGCCAGCACTCAA
CCAAATCAACCGCATGCGCAGCACCAAGGGTGTGATCATTGGGCTCGGGC
TTGGTGGGTTGGCCGCAACAGGGCTGATGTCCATGCCGCCCCATGCATCG
GCTGCGGCCAGTGAAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGCAG
GGGTCAGCTTCTGCTTATTGTTGTTACTCCTGCTATTCTCTGGGTGCTTT
ACAACATTTTGCAGCCGGCTCTGAACCAAATCAACAGGATGAGGTCCGAG
TGACAGATTGATTCTGTTGGAATAGGTGTAGTACAATGAATTTTTCTTGT
AATTGCACCTCATGTTGTCAATGAACTACCTTTCTTTTTTTTTTNANNNN
AAA
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