CX043990
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.571e-54 Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 2 Query: 119 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 487 LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYV LVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS Sbjct: 20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49 Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 2 Query: 125 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 490 E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK AQLCVLAEDCNQPDYV LVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+ LN+V++H+ S+ Sbjct: 23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 7.554e-49 Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = 2 Query: 125 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 487 E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK AQL VLAEDCNQPDYV LVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+ L++V +HI S Sbjct: 23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36 Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = 2 Query: 131 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 MD+MTAL+ VL+K++ GL RGLHE AK +++ +AQLCVLA + N+P Y LV+ALCA+H ++L+ VP K LGEW GLCKID EGKARKVVGCSC V+ FGEES+ V+ +++K Sbjct: 17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36 Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+ALCA+ ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36 Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 2 Query: 122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YV LV+AL A+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129 The following BLAST results are available for this feature:
BLAST of CX043990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043990 ID=CX043990; Name=CX043990; organism=Citrus sinensis; type=EST; length=690bpback to top |