CX043990

Overview
NameCX043990
Unique NameCX043990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.571e-54
Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 2
Query:  119 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 487
            LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYV LVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS
Sbjct:   20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49
Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 2
Query:  125 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 490
            E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK  AQLCVLAEDCNQPDYV LVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+  LN+V++H+ S+
Sbjct:   23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.554e-49
Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  125 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 487
            E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK  AQL VLAEDCNQPDYV LVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+  L++V +HI S
Sbjct:   23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = 2
Query:  131 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            MD+MTAL+ VL+K++   GL RGLHE AK +++ +AQLCVLA + N+P Y  LV+ALCA+H ++L+ VP  K LGEW GLCKID EGKARKVVGCSC V+  FGEES+   V+ +++K
Sbjct:   17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+ALCA+  ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CX043990 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  122 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVNLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 484
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YV LV+AL A+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
The following BLAST results are available for this feature:
BLAST of CX043990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_HORVU1.571e-5481.3040S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH1.165e-4974.5940S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH7.554e-4977.6940S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_PIG5.079e-3758.6840S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN5.079e-3758.6840S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK5.079e-3758.6840S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN5.079e-3758.6840S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_CYAPA5.615e-3658.4740S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_XENLA7.334e-3657.8540S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]
RS12_RAT7.334e-3657.8540S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G01-N2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043990 ID=CX043990; Name=CX043990; organism=Citrus sinensis; type=EST; length=690bp
GCAGGCCAACGTGCGCTCTCCGCTAAGGTAAAAAAGAGTAAATATTTGAA
CAAACAACAAGAAGACAATGTCAGGTGATGAGGCTGCCCCTGCTGTTGAG
ACAGCACCTCCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCTTT
GCAGGTTGTGTTGAGAAAATCACTTGCTCATGGTGGTCTTGCTCGTGGCC
TTCATGAAGGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTA
TTGGCTGAGGATTGTAACCAACCTGACTATGTTAATTTGGTCAAGGCACT
CTGTGCTGACCATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCC
TCGGCGAGTGGGCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGG
AAGGTTGTGGGTTGTTCCTGTGTTGTTGTGAAGGATTTCGGAGAGGAAAG
CGATGGTCTTAACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAG
TGATGGATTCATAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTT
TTTCTGTCAAATTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTC
GTTAGTTGCTATTACTTTTAGTACTTTTGTTCCTCAATCCTTTATTGCAA
CTGAAAACATCAATCCTTTTCTATATTTTTTGCTGGATTG
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