CX300914
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 8.670e-44 Identity = 84/150 (56.00%), Postives = 112/150 (74.67%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKPQQI 422 AD++G+ L+ DMAHISG+VA +A +PF +CD+VTTTTHK+LRGPRAG+IFFRK R + E +IN AVFP QGGPH + IAGIA LKE ++P+F+EY KQ+R N+Q + ++L + GY+L T GT+NHL+LWDL+PQ I Sbjct: 225 ADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEEL-KKRGYSLVTEGTDNHLVLWDLRPQGI 373
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 5.260e-41 Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 ADENG+ LM DMAHISGLV G +PF +C +VTTTTHK+LRG RAG+IF+R+ R N E+ IN+AVFPGLQGGPH H IAG+A LK+ TPEFKEY +Q+ N +AL+ LV + GY + TGG++NHLIL DL+ Sbjct: 218 ADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLR 364
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 8.972e-41 Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKPQQI 422 AD+ G+ LM DMAH SGLVA +PF YCD+VT+TTHK+LRGPR+G+IFFR+ R + E+KIN AVFP LQGGPH + IAG+A LKE + EFKEYA Q++ NA A+ + L+ GY L T GT+NHLILWDL+P+++ Sbjct: 201 ADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMN-KGYKLVTNGTDNHLILWDLRPKEL 350
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 1.172e-40 Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKP 413 A + G+ LM DMAHISGLVA G +PF Y D+VTTTTHKSLRGPR +IF+RK R + E KIN+AVFPGLQGGPH H IAGIA LK+ + +F +Y +QI NA+ LA++L + HGY+LATGGT+NHL+L DL+P Sbjct: 248 ATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERL-KKHGYSLATGGTDNHLLLVDLRP 394
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 4.453e-40 Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 AD+NG+ LM DMAHISGLVA G +PF +C +V+TTTHK+LRG RAG+IF+RK R N E+ IN+AVFPGLQGGPH H IAG+A LK+ TPEF+ Y +Q+ N +ALA+ L+ + GY + TGG++NHLIL DL+ Sbjct: 218 ADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGL-GYRVVTGGSDNHLILVDLR 364
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 162.54 bits (410), Expect = 5.815e-40 Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 AD+NG+ LM DMAH+SGLVA G +PF +C +V+TTTHK+LRG RAG+IF+RK R N E+ IN+AVFPGLQGGPH H IAG+A LK+ TPEF+ Y +Q+ N +ALA+ L+ + GY + TGG++NHLIL DL+ Sbjct: 218 ADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGL-GYRVVTGGSDNHLILVDLR 364
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 7.595e-40 Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKP 413 A + G+ LM DMAHISGLVA G +PF Y D+VTTTTHKSLRGPR +IF+RK R + E KIN+AVFPGLQGGPH H IAGIA L++ + +F +Y +Q+ NA+ LA+++ + HGY LATGGT+NHL+L DL+P Sbjct: 244 ATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERM-KKHGYALATGGTDNHLLLVDLRP 390
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39 Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDARNFETK------------INAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 AD+NG+ LM DMAHISGLVA G +PF +C +VTTTTHK+LRG RAG+IF+RK R+ + K IN+AVFPGLQGGPH H IAG+A LK+ T EFK Y Q+ N +AL+D L + GY + TGG++NHLIL DL+ Sbjct: 212 ADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTEL-GYKIVTGGSDNHLILMDLR 358
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.769e-39 Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 ADENG+ LM DMAHISGLVA G +PF +C +VTTTTHK+LRG RAG+IF+RK + N E+ IN+AVFPGLQGGPH H IAG+A LK+ T EFK Y Q+ N +AL++ L + GY + TGG++NHLIL DL+ Sbjct: 218 ADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTEL-GYKIVTGGSDNHLILVDLR 364
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 4.923e-39 Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3 Query: 3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410 ADENG+ LM DMAHISGLVA G +PF +C +VTTTTHK+LRG RAG+IF+RK + N E+ IN+AVFPGLQGGPH H IAG+A LK+ T EFK Y Q+ N +AL++ L + GY + TGG++NHLIL DL+ Sbjct: 218 ADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTEL-GYKIVTGGSDNHLILVDLR 364 The following BLAST results are available for this feature:
BLAST of CX300914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300914 ID=CX300914; Name=CX300914; organism=Citrus sinensis; type=EST; length=424bpback to top |