CX300914

Overview
NameCX300914
Unique NameCX300914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.670e-44
Identity = 84/150 (56.00%), Postives = 112/150 (74.67%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKPQQI 422
            AD++G+ L+ DMAHISG+VA  +A +PF +CD+VTTTTHK+LRGPRAG+IFFRK  R          + E +IN AVFP  QGGPH + IAGIA  LKE ++P+F+EY KQ+R N+Q + ++L +  GY+L T GT+NHL+LWDL+PQ I
Sbjct:  225 ADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEEL-KKRGYSLVTEGTDNHLVLWDLRPQGI 373          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.260e-41
Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            ADENG+ LM DMAHISGLV  G   +PF +C +VTTTTHK+LRG RAG+IF+R+  R            N E+ IN+AVFPGLQGGPH H IAG+A  LK+  TPEFKEY +Q+  N +AL+  LV + GY + TGG++NHLIL DL+
Sbjct:  218 ADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLR 364          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.972e-41
Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKPQQI 422
            AD+ G+ LM DMAH SGLVA     +PF YCD+VT+TTHK+LRGPR+G+IFFR+  R           + E+KIN AVFP LQGGPH + IAG+A  LKE  + EFKEYA Q++ NA A+ + L+   GY L T GT+NHLILWDL+P+++
Sbjct:  201 ADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMN-KGYKLVTNGTDNHLILWDLRPKEL 350          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.172e-40
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKP 413
            A + G+ LM DMAHISGLVA G   +PF Y D+VTTTTHKSLRGPR  +IF+RK  R           + E KIN+AVFPGLQGGPH H IAGIA  LK+  + +F +Y +QI  NA+ LA++L + HGY+LATGGT+NHL+L DL+P
Sbjct:  248 ATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERL-KKHGYSLATGGTDNHLLLVDLRP 394          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 4.453e-40
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            AD+NG+ LM DMAHISGLVA G   +PF +C +V+TTTHK+LRG RAG+IF+RK  R            N E+ IN+AVFPGLQGGPH H IAG+A  LK+  TPEF+ Y +Q+  N +ALA+ L+ + GY + TGG++NHLIL DL+
Sbjct:  218 ADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGL-GYRVVTGGSDNHLILVDLR 364          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 5.815e-40
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            AD+NG+ LM DMAH+SGLVA G   +PF +C +V+TTTHK+LRG RAG+IF+RK  R            N E+ IN+AVFPGLQGGPH H IAG+A  LK+  TPEF+ Y +Q+  N +ALA+ L+ + GY + TGG++NHLIL DL+
Sbjct:  218 ADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGL-GYRVVTGGSDNHLILVDLR 364          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.595e-40
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR-----------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLKP 413
            A + G+ LM DMAHISGLVA G   +PF Y D+VTTTTHKSLRGPR  +IF+RK  R           + E KIN+AVFPGLQGGPH H IAGIA  L++  + +F +Y +Q+  NA+ LA+++ + HGY LATGGT+NHL+L DL+P
Sbjct:  244 ATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERM-KKHGYALATGGTDNHLLLVDLRP 390          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39
Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDARNFETK------------INAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            AD+NG+ LM DMAHISGLVA G   +PF +C +VTTTTHK+LRG RAG+IF+RK  R+ + K            IN+AVFPGLQGGPH H IAG+A  LK+  T EFK Y  Q+  N +AL+D L  + GY + TGG++NHLIL DL+
Sbjct:  212 ADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTEL-GYKIVTGGSDNHLILMDLR 358          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.769e-39
Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            ADENG+ LM DMAHISGLVA G   +PF +C +VTTTTHK+LRG RAG+IF+RK  +            N E+ IN+AVFPGLQGGPH H IAG+A  LK+  T EFK Y  Q+  N +AL++ L  + GY + TGG++NHLIL DL+
Sbjct:  218 ADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTEL-GYKIVTGGSDNHLILVDLR 364          
BLAST of CX300914 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.923e-39
Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 3
Query:    3 ADENGSLLMMDMAHISGLVATGEAANPFAYCDIVTTTTHKSLRGPRAGVIFFRKDAR------------NFETKINAAVFPGLQGGPHVHQIAGIATQLKEVATPEFKEYAKQIRTNAQALADQLVRVHGYTLATGGTENHLILWDLK 410
            ADENG+ LM DMAHISGLVA G   +PF +C +VTTTTHK+LRG RAG+IF+RK  +            N E+ IN+AVFPGLQGGPH H IAG+A  LK+  T EFK Y  Q+  N +AL++ L  + GY + TGG++NHLIL DL+
Sbjct:  218 ADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTEL-GYKIVTGGSDNHLILVDLR 364          
The following BLAST results are available for this feature:
BLAST of CX300914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI8.670e-4456.00Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_RABIT5.260e-4156.76Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC1_DICDI8.972e-4154.97Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_CAEBR1.172e-4057.43Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_SHEEP4.453e-4055.41Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN5.815e-4054.73Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_CAEEL7.595e-4055.41Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_MOUSE1.692e-3955.41Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_HUMAN3.769e-3955.41Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB4.923e-3955.41Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC08003F07SK PhyRootSw1 Citrus sinensis cDNA clone C08003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300914 ID=CX300914; Name=CX300914; organism=Citrus sinensis; type=EST; length=424bp
TTGCTGACGAGAATGGATCCTTATTGATGATGGATATGGCTCACATCTCT
GGGTTGGTTGCAACTGGTGAAGCTGCCAATCCTTTCGCCTATTGCGACAT
CGTTACCACAACCACTCACAAGTCCCTTCGTGGACCCAGAGCCGGTGTTA
TCTTTTTCCGCAAAGATGCCCGTAATTTTGAGACTAAAATCAATGCTGCG
GTCTTTCCTGGTCTTCAAGGAGGTCCTCATGTTCATCAAATCGCTGGTAT
TGCCACTCAATTAAAGGAAGTTGCCACACCTGAATTCAAGGAATATGCTA
AGCAAATTCGTACCAATGCTCAGGCATTAGCTGATCAATTAGTTCGTGTT
CACGGTTATACTTTAGCGACTGGTGGGACTGAAAATCATTTAATCCTCTG
GGACTTAAAGCCACAGCAAATCAA
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