CX300912

Overview
NameCX300912
Unique NameCX300912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300912_ssr20 microsatellite CX300912_ssr20:20..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:154..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.554e-39
Identity = 80/97 (82.47%), Postives = 80/97 (82.47%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKL 383
            MLVYQDLLTGDELLSDSFPYKE  NGILWEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKL
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKL 97          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.006e-37
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQDLLTGDELLSDSFPYKE ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDIVDTFRLQEQPAFDKKQFVT+MKR+IK
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.046e-36
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQDLLTGDELLSDSFPY+E ENGILWEV+GKWVVQGA+DVDIGANPS               KVVDIVDTFRLQEQP FDKKQFVT+MKR+IK
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.366e-36
Identity = 76/96 (79.17%), Postives = 79/96 (82.29%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQDLLTGDELLSDSF YKE ENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKRFIK
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.784e-36
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQDLLTGDELLSDSFPYKE +NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIVDTFRLQEQPAFDKKQFVTY+KR+IK
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.784e-36
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQDLLTGDELLSDSFPYKE  NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKR+IK
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.973e-36
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKL 383
            MLVYQDLLTGDELLSDSFPYKE ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQP  DKKQF+ Y+K+FIKL
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKL 97          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.787e-35
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKKQF+++MKR+IK
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.787e-35
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIK 380
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKKQF+ Y+KR+IK
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIK 96          
BLAST of CX300912 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.278e-34
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 3
Query:   93 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPS--XXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKL 383
            MLVYQDLL+GDELLSDSFPYKE +NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDIVDTFRLQEQP FDKKQFVT++KR+IKL
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKL 99          
The following BLAST results are available for this feature:
BLAST of CX300912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TCTP_HEVBR8.554e-3982.47Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC8.006e-3777.08Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.046e-3677.08Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.366e-3679.17Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.784e-3677.08Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.784e-3677.08Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA3.973e-3675.26Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT9.787e-3572.92Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU9.787e-3572.92Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN1.278e-3473.74Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC08003F05SK PhyRootSw1 Citrus sinensis cDNA clone C08003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300912 ID=CX300912; Name=CX300912; organism=Citrus sinensis; type=EST; length=384bp
TCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGT
TGATTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGT
CTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGACTCTTTTCCCT
ACAAGGAAACTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTT
GTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGG
AGCTGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTCGACA
TTGTCGACACATTCAGGCTGCAGGAGCAACCTGCTTTTGACAAGAAGCAG
TTTGTAACATACATGAAGAGATTCATCAAGTTGC
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