CX300911

Overview
NameCX300911
Unique NameCX300911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.657e-16
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  165 SSVDPFSEE--ADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPFSE    D G +A + +Y+H+RIQQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVI 85          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.470e-16
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  162 FSSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            F++VDPF++  D  D A+  N IHIRIQQRNGRK+LTT+QGL P     K++L+  K+ F CNGTIV D+ LG VI
Sbjct:    7 FNTVDPFADTGD--DDAQPLNNIHIRIQQRNGRKTLTTVQGL-PREFDQKRILRALKKDFACNGTIVKDDDLGEVI 79          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  165 SSVDPFSEE--ADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPF+E    D G +A + +Y+H+RIQQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVI 85          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  165 SSVDPFSEE--ADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPF+E    D G +A + +Y+H+RIQQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVI 85          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  165 SSVDPFSEE--ADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPF+E    D G +A + +Y+H+RIQQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGL-KKEFSYSKILKDLKKEFCCNGTVVQDPELGQVI 85          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  147 VDFDPFSSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            +  +   S DPF++  D  D A +SNYIHIRIQQRNGRK+LTT+QG+ P    LK++LK  ++ F CNG +V D+ +G +I
Sbjct:    1 MSIENLKSFDPFADTGD--DEASSSNYIHIRIQQRNGRKTLTTVQGI-PEEYDLKRILKVLRKDFGCNGNMVKDDEMGEII 78          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  147 VDFDPFSSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            +  +   S DPF++  D  D    SNYIHIRIQQRNGRK+LTT+QG+ P    LK++LK  K+ F CNG IV D  +G +I
Sbjct:    1 MSIENLKSFDPFADTGD--DETATSNYIHIRIQQRNGRKTLTTVQGV-PEEYDLKRILKVLKKDFACNGNIVKDPEMGEII 78          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  165 SSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            +S DPF+E      +     Y+HIRIQQRNGRKSLTT+QGL    +   K+LK  K+  CCNGT+VND+ LG VI
Sbjct:   10 TSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGL-KKELSYDKILKDLKKALCCNGTVVNDKELGKVI 83          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.938e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  165 SSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPF+E       A   +Y+H+R+QQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGL-KKDYSYNKILKDLKKEFCCNGTVVQDPELGQVI 83          
BLAST of CX300911 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.011e-15
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  165 SSVDPFSEEADFGDSAKASNYIHIRIQQRNGRKSLTTIQGLDPATVPLKKLLKHFKRQFCCNGTIVNDEALGPVI 389
            ++ DPF++       A    Y+HIR+QQRNGRKSLTT+QGL        K+LK  K++FCCNGT+V D  LG VI
Sbjct:   10 TAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL-KKEYSYSKILKDLKKEFCCNGTVVQDSELGQVI 83          
The following BLAST results are available for this feature:
BLAST of CX300911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_SPOST2.657e-1654.55Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_SCHPO3.470e-1656.58Protein translation factor sui1 OS=Schizosaccharom... [more]
SUI1_ORYSJ5.919e-1653.25Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI5.919e-1653.25Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE5.919e-1653.25Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_ASHGO5.919e-1649.38Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST7.730e-1650.62Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_PIMBR1.722e-1553.33Protein translation factor SUI1 homolog OS=Pimpine... [more]
SUI1_SALBA2.938e-1550.67Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI12_ARATH5.011e-1550.67Protein translation factor SUI1 homolog 2 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC08003F03SK PhyRootSw1 Citrus sinensis cDNA clone C08003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300911 ID=CX300911; Name=CX300911; organism=Citrus sinensis; type=EST; length=391bp
AAAGCTTTTTTGTTCTGTTCGTCGGAGTTTCCTTCTTCCAAACCAACTTC
CTTCTTCCCTCTTGTAGCCAGAAAAAGCCAGTCCTTCGACAAACACACAA
CAAAAAACAAGTCTTTTCCCACCTGCCACCGAGAAGTTCTATGTCTGTTG
ATTTCGACCCCTTTAGCTCTGTCGATCCCTTTAGCGAGGAGGCTGACTTC
GGTGACTCAGCGAAGGCATCCAACTACATCCACATTCGAATTCAACAACG
CAACGGACGAAAGTCCCTGACCACCATCCAAGGTCTCGATCCTGCCACAG
TCCCACTCAAGAAGCTGCTCAAGCACTTCAAGCGTCAATTCTGCTGCAAC
GGAACCATTGTCAACGACGAAGCTCTCGGACCAGTCATTCA
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