EH406438

Overview
NameEH406438
Unique NameEH406438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_DICDI (Probable Ufm1-conjugating enzyme 1 OS=Dictyostelium discoideum GN=ufc1 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69
Identity = 115/163 (70.55%), Postives = 138/163 (84.66%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRDD 511
            D +TK T+ QIPLL+ KAGPRDG  W  RLKEEY+ALI Y ++NK  DNDWF I + NP GTRW GKCWY++N  KYEFDL+FD+PVTYP TAPE+ +P+LDGKT+KMYRGGKICLT+HFKPLW++N P FGIAHAL LGLAPWLAAE+P LVD+G+IKH++D
Sbjct:    2 DNHTKQTVQQIPLLTVKAGPRDGDKWIDRLKEEYQALIKYVEINKKADNDWFNIES-NPLGTRWQGKCWYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEKMYRGGKICLTIHFKPLWSRNVPHFGIAHALALGLAPWLAAEVPHLVDNGIIKHKED 163          
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_BOVIN (Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.706e-64
Identity = 105/165 (63.64%), Postives = 133/165 (80.61%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRDDVS 517
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA EIP L+  G+I+H++  S
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCS 166          
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_HUMAN (Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 8.027e-64
Identity = 104/162 (64.20%), Postives = 132/162 (81.48%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 508
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA EIP L+  G+I+H++
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163          
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_MOUSE (Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.335e-63
Identity = 102/165 (61.82%), Postives = 133/165 (80.61%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRDDVS 517
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK++DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA E+P L+  G+I+H++  S
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNSDNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKEKCS 166          
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_RAT (Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.874e-63
Identity = 101/162 (62.35%), Postives = 131/162 (80.86%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 508
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA E+P L+  G+I+H++
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163          
BLAST of EH406438 vs. ExPASy Swiss-Prot
Match: UFC1_CAEEL (Probable Ufm1-conjugating enzyme OS=Caenorhabditis elegans GN=C40H1.6 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.870e-61
Identity = 103/159 (64.78%), Postives = 126/159 (79.25%), Query Frame = 2
Query:   23 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIK 499
            D  TKS+L  IPL  TKA PRDG  W +RLKEEY+A+IA  Q NK  D DWF++ + N  GT+W GKCWY HN++KYEFD++FDIP+TYP TAPE+ LP+LDGKT KMYRGGKICL+ HFKPLWA+N P+FGIAHA  LGL PW+A EIP L++ G+I+
Sbjct:    2 DDATKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLES-NERGTKWFGKCWYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLWARNTPKFGIAHAFALGLGPWMAVEIPDLIEKGLIQ 159          
The following BLAST results are available for this feature:
BLAST of EH406438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UFC1_DICDI2.848e-6970.55Probable Ufm1-conjugating enzyme 1 OS=Dictyosteliu... [more]
UFC1_BOVIN4.706e-6463.64Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE... [more]
UFC1_HUMAN8.027e-6464.20Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 ... [more]
UFC1_MOUSE2.335e-6361.82Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 ... [more]
UFC1_RAT8.874e-6362.35Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=... [more]
UFC1_CAEEL4.870e-6164.78Probable Ufm1-conjugating enzyme OS=Caenorhabditis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DF11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406438 ID=EH406438; Name=EH406438; organism=Citrus sinensis; type=EST; length=678bp
GTTAGCAAAGATGGAGGGATGGGACCCGAACACGAAATCGACGCTGACCC
AGATCCCGCTTTTGTCAACGAAAGCCGGTCCCAGAGACGGTGCGGCGTGG
ACGCAGCGGCTTAAAGAGGAGTACAAGGCTTTGATCGCCTATACACAGAT
GAATAAGTCCAACGACAACGATTGGTTCCGCATCTCAGCGGCCAATCCGG
AGGGGACACGTTGGACGGGCAAGTGCTGGTACGTTCACAACCTCTTAAAG
TACGAATTCGATCTCCAGTTTGATATTCCGGTTACGTACCCCGCCACGGC
CCCCGAGCTTGAGCTCCCCCAACTCGATGGCAAGACCCAGAAGATGTACA
GAGGAGGGAAGATTTGCTTGACCGTACATTTCAAGCCACTTTGGGCTAAA
AACTGTCCTAGGTTTGGTATAGCACATGCACTTTGTCTTGGTCTTGCTCC
ATGGCTTGCAGCAGAGATTCCCATTCTTGTTGATTCCGGAATGATTAAGC
ACAGAGATGATGTGAGCGGATCTAGTGAGTCTTAGTTCGTTAATGTAACA
TTAAGACTGTAAAAGGAATGATGATTTTGCAAATATTTTGTTTGTGGGCT
ATCAATGACTAATGATTTTGACCTGCCTTGCNNNNANAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAC
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