FC871833

Overview
NameFC871833
Unique NameFC871833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6572 contig Csv1_Contig6572:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871833 vs. ExPASy Swiss-Prot
Match: BLC_CITFR (Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.802e-11
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 3 
Query:  210 ATYTLNEDGTVHVRNETWSDGKR--GSIEGTAY-NADPKSDEAKLKVKFYXXXXXXXXXXDGNYWVLYIDDNYQYALIGEPTRKYLWILCK 473
            ATY+L +DG ++V N+ ++  +      EG AY   DP +  A LKV F+           G Y V+ +D  Y++AL+  P R YLWIL +
Sbjct:   62 ATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGDPST--AALKVSFFGPFY-------GGYNVIALDREYRHALVCGPDRDYLWILSR 143

HSP 2 Score: 37.3502 bits (85), Expect = 7.802e-11
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 1 
Query:  100 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPILERIRGLLTL 222
            K + VV   D KRY+G WYEIA F  R +  L+++    +L
Sbjct:   26 KGVTVVNNFDAKRYLGTWYEIARFDHRFERGLDKVTATYSL 66
The following BLAST results are available for this feature:
BLAST of FC871833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BLC_CITFR7.802e-1136.26Outer membrane lipoprotein blc OS=Citrobacter freu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DD03FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871833 ID=FC871833; Name=FC871833; organism=Citrus sinensis; type=EST; length=561bp
AACACAACAACTTGAGCTAGTACTCATTCTGATAAACCCCCCCTCTGTCA
TTCCGAAAAGCAGATTGAAACTTTGTCAGCACAAAAAATGGCCTCCAAGA
AAGAGATGGAAGTGGTGAGGGGTCTTGACATAAAGCGTTACATGGGGAGA
TGGTATGAGATAGCTTCATTTCCATCAAGGAATCAGCCCATACTGGAGCG
GATACGAGGGCTACTTACACTTTGAATGAAGATGGGACAGTGCATGTGCG
GAATGAGACATGGAGTGATGGCAAAAGAGGGTCCATCGAAGGCACTGCTT
ACAACGCTGATCCTAAGAGCGATGAGGCCAAGCTTAAGGTCAAGTTTTAT
GTGCCTCCCTTTTTCCCCATCATTCCTGTTGATGGCAACTACTGGGTTTT
GTATATTGATGATAATTATCAGTATGCTTTGATTGGAGAGCCTACCAGGA
AATATCTCTGGATTTTATGCAAGGGAGCCTCATATGGATGAAGCGATATA
ATCTCACCTAGTGGAGAAGGCTACAAATGAAGGGTATGATCGCGATCGAA
CTGCCCTGAAC
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