CX300907

Overview
NameCX300907
Unique NameCX300907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300907_ssr178 microsatellite CX300907_ssr178:178..189. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of CX300907 vs. ExPASy Swiss-Prot
Match: ZMY10_HUMAN (Zinc finger MYND domain-containing protein 10 OS=Homo sapiens GN=ZMYND10 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.387e-21
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   34 PLEELQQHWLEIEFRICVSCVSLARFISEHADHLPLSILSRITDTHDYXXXXXXXXENPPWTRRLENGKWQKLIDLKWTNIEPINLLKITKLEGQLWISLYHLIAKNIFRERYYLNTFRKGQLLRVRKYINELLL 438
            P++ELQ+    +EF I +  +S+ R+I++  D L LS LSR+  TH+         E+ PW+RR E GK Q+    +W  + P    K++KL+GQ+WI+LY+L+     + RY L +F KG+LL++R ++ + LL
Sbjct:  168 PMQELQKQAELMEFEIALKALSVLRYITDCVDSLSLSTLSRMLSTHNLPCLLVELLEHSPWSRR-EGGKLQQFEGSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLRAFLTDTLL 301          
BLAST of CX300907 vs. ExPASy Swiss-Prot
Match: ZMY10_MOUSE (Zinc finger MYND domain-containing protein 10 OS=Mus musculus GN=Zmynd10 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.089e-21
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   31 TPLEELQQHWLEIEFRICVSCVSLARFISEHADHLPLSILSRITDTHDYXXXXXXXXENPPWTRRLENGKWQKLIDLKWTNIEPINLLKITKLEGQLWISLYHLIAKNIFRERYYLNTFRKGQLLRVRKYINELLL 438
            TP++ELQ+    +EF I +  +S+ R+I++  D L LS L+R+  TH+         E+ PW+RR+  GK Q     +W  + P    K+ KL+GQ+WI+LY+L+     R RY L +F KGQLL+++ ++ + LL
Sbjct:  167 TPMQELQKQAEMMEFEISLKALSVLRYITDCVDSLSLSTLNRMLRTHNLPCLLVELLEHSPWSRRV-GGKLQHFESGRWQTVAPSEQQKLNKLDGQVWIALYNLLLSPEARARYCLTSFAKGQLLKLQAFLTDTLL 301          
The following BLAST results are available for this feature:
BLAST of CX300907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZMY10_HUMAN1.387e-2137.78Zinc finger MYND domain-containing protein 10 OS=H... [more]
ZMY10_MOUSE3.089e-2137.50Zinc finger MYND domain-containing protein 10 OS=M... [more]
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Properties
Property NameValue
Genbank descriptionC08003E11SK PhyRootSw1 Citrus sinensis cDNA clone C08003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300907 ID=CX300907; Name=CX300907; organism=Citrus sinensis; type=EST; length=439bp
AAAGAATATGCTGATTCTTTAGCATCTCGTACGCCATTAGAAGAATTACA
ACAACATTGGTTAGAGATTGAATTTCGTATTTGTGTGAGTTGTGTGTCAT
TAGCAAGATTTATATCCGAACATGCTGATCATTTACCATTATCAATATTA
AGTCGTATTACTGATACTCATGATTATTTATTATTATTAATCCCATTAAT
TGAAAATCCACCATGGACACGTCGTTTAGAGAATGGTAAATGGCAAAAAT
TAATTGATTTAAAATGGACAAATATTGAACCAATTAATTTATTGAAAATT
ACCAAATTAGAAGGACAATTATGGATATCATTATATCATTTAATTGCTAA
AAATATTTTTCGTGAAAGATATTATTTAAATACTTTTCGTAAAGGACAAT
TATTAAGAGTTAGAAAATATATTAATGAATTATTATTAG
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