CX300906

Overview
NameCX300906
Unique NameCX300906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            A+  + +  +VGGL+W T+ +SL NAF+ YG++ + +VITDR TGRS+GFGFVTFSS  +  +A++ MN  ELDGR I
Sbjct:    2 AAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNI 79          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 2
Query:   47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            + +  +VGGL W T + SL NAFS+YG + + ++ITDR TGRS+GFGFVTF+S EA ++A++ MN  +LDGR I
Sbjct:    4 VEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNI 77          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.899e-18
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            A+  + +  +VGGL+W T  ++L  AF+ +GQ+ + +VITDR TGRS+GFGFVTFSS ++  +A++ MN  ELDGR I
Sbjct:    2 AAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNI 79          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            AS  + +  +VGGL+W T E SL  AFSQ+G+L + ++I DR TGRS+GFGFVTF   ++ ++A++ MN  +LDGR+I
Sbjct:    2 ASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.431e-17
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2
Query:   47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            + +  +VGGL+W T ++SL  AFSQ+G + + ++I DR TGRS+GFGFVTF   ++ ++A++ MN  ELDGR I
Sbjct:    4 VEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNI 77          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2
Query:   47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            + +  +VGGL+W T +  L   FSQ+G++ + ++I DR TGRS+GFGFVTF   ++ ++A+D+MN  ELDGRTI
Sbjct:    4 VEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTI 77          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.238e-17
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            AS  + +  +VGGL+W T + +L  AFSQYG++ + ++I DR TGRS+GFGFVTF   ++ ++A++ MN  +LDGR+I
Sbjct:    2 ASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268
            AS  + +  +VGGL+W T + +L  AF+QYG + + ++I DR TGRS+GFGFVTF   +A ++A++ MN  +LDGR+I
Sbjct:    2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   56 EVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTIRCDFA 283
            +++VGGLS+ T E SL   FS+YGQ+ EV V+ DR T RS+GFGFVTF +++ A++A+  MN   +DGR IR D A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   56 EVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTIRCDFA 283
            +++VGGLS+ T E SL   FS+YGQ+ EV V+ DR T RS+GFGFVTF +++ A++A+  MN   +DGR IR D A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of CX300906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GRPA_MAIZE4.431e-1952.56Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU9.870e-1954.05Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI4.899e-1850.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP2_SINAL1.861e-1750.00Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_DAUCA2.431e-1748.65Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP10_BRANA5.416e-1748.65Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP1_SINAL9.238e-1747.44Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH1.207e-1647.44Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
CIRBP_PONAB1.576e-1652.63Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN1.576e-1652.63Cold-inducible RNA-binding protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC08003E10SK PhyRootSw1 Citrus sinensis cDNA clone C08003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300906 ID=CX300906; Name=CX300906; organism=Citrus sinensis; type=EST; length=380bp
TCGGCCCGAGGCCTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTC
GGCACGAGGTTTACGTTGGAGGCTTAAGCTGGGGAACCACTGAAGATTCT
CTCTCAAACGCTTTCTCTCAATACGGACAACTCGATGAAGTTCGTGTGAT
TACCGATAGAAACACTGGACGATCAAAGGGATTTGGTTTCGTCACATTCT
CTTCAGTTGAAGCTGCCCAAGAAGCTGTTGACAAGATGAACAACACTGAA
CTCGATGGAAGAACCATCAGATGCGATTTTGCTTCTGACAGAGAATCTGG
AGGAGGCAGTGACAGAAGAGGAGGATCTGGACCATACGAAAGACGTGGTG
GATCTTCAAGAGGTGGATCCAGAGGAGGCT
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