CX300906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19 Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 2 Query: 35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 A+ + + +VGGL+W T+ +SL NAF+ YG++ + +VITDR TGRS+GFGFVTFSS + +A++ MN ELDGR I Sbjct: 2 AAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNI 79
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19 Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 2 Query: 47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 + + +VGGL W T + SL NAFS+YG + + ++ITDR TGRS+GFGFVTF+S EA ++A++ MN +LDGR I Sbjct: 4 VEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNI 77
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.899e-18 Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 2 Query: 35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 A+ + + +VGGL+W T ++L AF+ +GQ+ + +VITDR TGRS+GFGFVTFSS ++ +A++ MN ELDGR I Sbjct: 2 AAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNI 79
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17 Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 2 Query: 35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 AS + + +VGGL+W T E SL AFSQ+G+L + ++I DR TGRS+GFGFVTF ++ ++A++ MN +LDGR+I Sbjct: 2 ASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.431e-17 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 Query: 47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 + + +VGGL+W T ++SL AFSQ+G + + ++I DR TGRS+GFGFVTF ++ ++A++ MN ELDGR I Sbjct: 4 VEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNI 77
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 Query: 47 IRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 + + +VGGL+W T + L FSQ+G++ + ++I DR TGRS+GFGFVTF ++ ++A+D+MN ELDGRTI Sbjct: 4 VEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTI 77
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.238e-17 Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 2 Query: 35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 AS + + +VGGL+W T + +L AFSQYG++ + ++I DR TGRS+GFGFVTF ++ ++A++ MN +LDGR+I Sbjct: 2 ASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16 Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 2 Query: 35 ASCRIRHEVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTI 268 AS + + +VGGL+W T + +L AF+QYG + + ++I DR TGRS+GFGFVTF +A ++A++ MN +LDGR+I Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16 Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2 Query: 56 EVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTIRCDFA 283 +++VGGLS+ T E SL FS+YGQ+ EV V+ DR T RS+GFGFVTF +++ A++A+ MN +DGR IR D A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX300906 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16 Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2 Query: 56 EVYVGGLSWGTTEDSLSNAFSQYGQLDEVRVITDRNTGRSKGFGFVTFSSVEAAQEAVDKMNNTELDGRTIRCDFA 283 +++VGGLS+ T E SL FS+YGQ+ EV V+ DR T RS+GFGFVTF +++ A++A+ MN +DGR IR D A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of CX300906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300906 ID=CX300906; Name=CX300906; organism=Citrus sinensis; type=EST; length=380bpback to top |