CX300904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_HUMAN (EF-hand domain-containing family member C2 OS=Homo sapiens GN=EFHC2 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 12 KWMDNQQY------VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEAN 326 K+M+ Y +RF A+ T+K D+ R F+I+++L DDT+ V+EP++RNSG G FL++ + K ++ +++ + IG V +NGY FR+L DE+T N+ E N Sbjct: 421 KFMEKDSYGSKSNILRFFAKLVTDKCVDLDRMFVISYYLGDDTISVFEPIERNSGIAGGMFLKRSRVKKPGQEVFKSELSEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYMEQN 537
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_DANRE (EF-hand domain-containing family member C2 OS=Danio rerio GN=efhc2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15 Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVSTM 365 +RF + T+ P D R FII F+L DDT+ V+EP QRNSG + GKFLE+G+ K ++ +++F D +G + +N F+++ D+FT ++ E + E P+ + T+ Sbjct: 432 LRFVGKMLTDSPVDKERVFIICFYLTDDTIAVFEPPQRNSGVIGGKFLERGRVKKPGQELFKSEMSEYFTAQDLYVGAHLLLNSQPFQLVDADDFTFSYMEQHADE-FPKANIGTI 546
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_MOUSE (EF-hand domain-containing family member C2 OS=Mus musculus GN=Efhc2 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 6.107e-14 Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3 Query: 36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEAN 326 +R+ + T+K D+ R F+I F+L DDT+ V+EP++ NSG G FL++ + K ++ +++ + IG V INGY F +L DE+T N+ E N Sbjct: 434 LRYFGKLITHKCADVDRIFVIAFYLSDDTISVFEPIENNSGNAGGMFLKRSRVKKPGQEVFKSEFSEYIKAEELYIGATVNINGYLFILLNADEYTLNYMENN 536
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC1_MOUSE (EF-hand domain-containing protein 1 OS=Mus musculus GN=Efhc1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.042e-13 Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 3 Query: 18 MDNQQYVRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKR----DNQ-FFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVS 359 M++ + +R+ A + PED R F+ ++FL D + ++EP RNSG + GKFL G+ K VK DN ++ P+DF IG + + G+ F IL DE+ + E+N + P+ S Sbjct: 414 MNDNKVLRYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFL--GRTKVVKSFSPVDNPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALAS 530
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_CHICK (EF-hand domain-containing family member C2 OS=Gallus gallus GN=EFHC2 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.152e-12 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFRE 335 +RF A+ T+ P D R+FII +FL V+E QRN+G + GKFLEKG+ K ++ +++F D IG V +G++F ++ DE+T N+ E + E Sbjct: 433 LRFLAKLVTDSPIDKDRKFIICYFLMMPLYSVFEHSQRNTGIIGGKFLEKGRIKKPGQELFKSEPSEYFKAQDLFIGARVCFHGHNFLLVDADEYTINYMEKHANE 538
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC1_HUMAN (EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.965e-12 Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 3 Query: 18 MDNQQYVRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKR----DNQ-FFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVS 359 +++ + +R+ A + PED R F+ ++FL D + ++EP RNSG + GK+L G+ K VK DN ++ P+DF IG + + G+ F IL DE+ + E+N + P+ S Sbjct: 414 VNDNKVLRYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYL--GRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFGHRFIILDTDEYVLKYMESNAAQYSPEALAS 530 The following BLAST results are available for this feature:
BLAST of CX300904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300904 ID=CX300904; Name=CX300904; organism=Citrus sinensis; type=EST; length=434bpback to top |