CX300904

Overview
NameCX300904
Unique NameCX300904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_HUMAN (EF-hand domain-containing family member C2 OS=Homo sapiens GN=EFHC2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   12 KWMDNQQY------VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEAN 326
            K+M+   Y      +RF A+  T+K  D+ R F+I+++L DDT+ V+EP++RNSG   G FL++ + K   ++      +++    +  IG  V +NGY FR+L  DE+T N+ E N
Sbjct:  421 KFMEKDSYGSKSNILRFFAKLVTDKCVDLDRMFVISYYLGDDTISVFEPIERNSGIAGGMFLKRSRVKKPGQEVFKSELSEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYMEQN 537          
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_DANRE (EF-hand domain-containing family member C2 OS=Danio rerio GN=efhc2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVSTM 365
            +RF  +  T+ P D  R FII F+L DDT+ V+EP QRNSG + GKFLE+G+ K   ++      +++F   D  +G  + +N   F+++  D+FT ++ E +  E  P+  + T+
Sbjct:  432 LRFVGKMLTDSPVDKERVFIICFYLTDDTIAVFEPPQRNSGVIGGKFLERGRVKKPGQELFKSEMSEYFTAQDLYVGAHLLLNSQPFQLVDADDFTFSYMEQHADE-FPKANIGTI 546          
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_MOUSE (EF-hand domain-containing family member C2 OS=Mus musculus GN=Efhc2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.107e-14
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEAN 326
            +R+  +  T+K  D+ R F+I F+L DDT+ V+EP++ NSG   G FL++ + K   ++      +++    +  IG  V INGY F +L  DE+T N+ E N
Sbjct:  434 LRYFGKLITHKCADVDRIFVIAFYLSDDTISVFEPIENNSGNAGGMFLKRSRVKKPGQEVFKSEFSEYIKAEELYIGATVNINGYLFILLNADEYTLNYMENN 536          
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC1_MOUSE (EF-hand domain-containing protein 1 OS=Mus musculus GN=Efhc1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.042e-13
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   18 MDNQQYVRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKR----DNQ-FFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVS 359
            M++ + +R+ A   +  PED  R F+ ++FL  D + ++EP  RNSG + GKFL  G+ K VK     DN  ++ P+DF IG  + + G+ F IL  DE+   + E+N  +  P+   S
Sbjct:  414 MNDNKVLRYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFL--GRTKVVKSFSPVDNPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALAS 530          
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC2_CHICK (EF-hand domain-containing family member C2 OS=Gallus gallus GN=EFHC2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.152e-12
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   36 VRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKRD------NQFFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFRE 335
            +RF A+  T+ P D  R+FII +FL      V+E  QRN+G + GKFLEKG+ K   ++      +++F   D  IG  V  +G++F ++  DE+T N+ E +  E
Sbjct:  433 LRFLAKLVTDSPIDKDRKFIICYFLMMPLYSVFEHSQRNTGIIGGKFLEKGRIKKPGQELFKSEPSEYFKAQDLFIGARVCFHGHNFLLVDADEYTINYMEKHANE 538          
BLAST of CX300904 vs. ExPASy Swiss-Prot
Match: EFHC1_HUMAN (EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.965e-12
Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   18 MDNQQYVRFKARFNTNKPEDIGREFIITFFLHDDTVLVYEPVQRNSGFVSGKFLEKGKYKNVKR----DNQ-FFDPADFRIGKDVTINGYSFRILGCDEFTKNWYEANFREVIPQEFVS 359
            +++ + +R+ A   +  PED  R F+ ++FL  D + ++EP  RNSG + GK+L  G+ K VK     DN  ++ P+DF IG  + + G+ F IL  DE+   + E+N  +  P+   S
Sbjct:  414 VNDNKVLRYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYL--GRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFGHRFIILDTDEYVLKYMESNAAQYSPEALAS 530          
The following BLAST results are available for this feature:
BLAST of CX300904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EFHC2_HUMAN2.243e-1635.90EF-hand domain-containing family member C2 OS=Homo... [more]
EFHC2_DANRE7.214e-1535.34EF-hand domain-containing family member C2 OS=Dani... [more]
EFHC2_MOUSE6.107e-1435.92EF-hand domain-containing family member C2 OS=Mus ... [more]
EFHC1_MOUSE1.042e-1335.29EF-hand domain-containing protein 1 OS=Mus musculu... [more]
EFHC2_CHICK1.152e-1236.79EF-hand domain-containing family member C2 OS=Gall... [more]
EFHC1_HUMAN1.965e-1233.61EF-hand domain-containing protein 1 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionC08003E08SK PhyRootSw1 Citrus sinensis cDNA clone C08003E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300904 ID=CX300904; Name=CX300904; organism=Citrus sinensis; type=EST; length=434bp
CACGAGGCTTCAAGTGGATGGATAATCAACAATACGTCAGATTTAAGGCA
AGATTCAACACTAATAAGCCAGAAGATATTGGCAGAGAATTCATCATCAC
TTTCTTCTTACACGATGATACCGTTCTCGTCTATGAACCCGTTCAAAGAA
ATTCAGGTTTCGTGAGTGGAAAGTTCTTGGAAAAGGGCAAATATAAGAAT
GTAAAGAGAGATAATCAATTCTTTGACCCTGCAGATTTCAGAATTGGCAA
GGATGTTACTATTAATGGATACTCTTTCAGAATTTTGGGATGTGATGAAT
TCACTAAAAACTGGTATGAAGCTAACTTCAGAGAAGTTATTCCTCAAGAA
TTTGTCTCCACTATGTAAAAGGAAACTGCGAAATATTTAATAAAATTTTT
TATTCATTAATTATGCATTTTATGAGTCACCCGA
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